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Results: 1 to 20 of 128

1.

Genome-wide landscape of alternative splicing events in Brachypodium distachyon.

Walters B, Lum G, Sablok G, Min XJ.

DNA Res. 2013 Apr;20(2):163-71. doi: 10.1093/dnares/dss041. Epub 2013 Jan 7.

PMID:
23297300
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genome-wide survey of alternative splicing in the grass Brachypodium distachyon: a emerging model biosystem for plant functional genomics.

Sablok G, Gupta PK, Baek JM, Vazquez F, Min XJ.

Biotechnol Lett. 2011 Mar;33(3):629-36. doi: 10.1007/s10529-010-0475-6. Epub 2010 Nov 25.

PMID:
21107652
[PubMed - indexed for MEDLINE]
3.

Genome-wide identification and analysis of MAPK and MAPKK gene families in Brachypodium distachyon.

Chen L, Hu W, Tan S, Wang M, Ma Z, Zhou S, Deng X, Zhang Y, Huang C, Yang G, He G.

PLoS One. 2012;7(10):e46744. doi: 10.1371/journal.pone.0046744. Epub 2012 Oct 17.

PMID:
23082129
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The compact Brachypodium genome conserves centromeric regions of a common ancestor with wheat and rice.

Qi L, Friebe B, Wu J, Gu Y, Qian C, Gill BS.

Funct Integr Genomics. 2010 Nov;10(4):477-92. doi: 10.1007/s10142-010-0190-3. Epub 2010 Sep 15.

PMID:
20842403
[PubMed - indexed for MEDLINE]
5.

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat.

Gu YQ, Ma Y, Huo N, Vogel JP, You FM, Lazo GR, Nelson WM, Soderlund C, Dvorak J, Anderson OD, Luo MC.

BMC Genomics. 2009 Oct 27;10:496. doi: 10.1186/1471-2164-10-496.

PMID:
19860896
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon.

Tyler L, Bragg JN, Wu J, Yang X, Tuskan GA, Vogel JP.

BMC Genomics. 2010 Oct 25;11:600. doi: 10.1186/1471-2164-11-600.

PMID:
20973991
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The family of DOF transcription factors in Brachypodium distachyon: phylogenetic comparison with rice and barley DOFs and expression profiling.

Hernando-Amado S, González-Calle V, Carbonero P, Barrero-Sicilia C.

BMC Plant Biol. 2012 Nov 5;12:202. doi: 10.1186/1471-2229-12-202.

PMID:
23126376
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat.

Huo N, Vogel JP, Lazo GR, You FM, Ma Y, McMahon S, Dvorak J, Anderson OD, Luo MC, Gu YQ.

Plant Mol Biol. 2009 May;70(1-2):47-61. doi: 10.1007/s11103-009-9456-3. Epub 2009 Jan 29.

PMID:
19184460
[PubMed - indexed for MEDLINE]
10.

Protein encoding genes in an ancient plant: analysis of codon usage, retained genes and splice sites in a moss, Physcomitrella patens.

Rensing SA, Fritzowsky D, Lang D, Reski R.

BMC Genomics. 2005 Mar 22;6:43.

PMID:
15784153
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii.

Labadorf A, Link A, Rogers MF, Thomas J, Reddy AS, Ben-Hur A.

BMC Genomics. 2010 Feb 17;11:114. doi: 10.1186/1471-2164-11-114.

PMID:
20163725
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genomewide comparative analysis of alternative splicing in plants.

Wang BB, Brendel V.

Proc Natl Acad Sci U S A. 2006 May 2;103(18):7175-80. Epub 2006 Apr 21.

PMID:
16632598
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome.

Severing EI, van Dijk AD, Stiekema WJ, van Ham RC.

BMC Genomics. 2009 Apr 9;10:154. doi: 10.1186/1471-2164-10-154.

PMID:
19358722
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation.

Bossolini E, Wicker T, Knobel PA, Keller B.

Plant J. 2007 Feb;49(4):704-17. Epub 2007 Jan 18. Erratum in: Plant J. 2007 Jun;50(6):1129.

PMID:
17270010
[PubMed - indexed for MEDLINE]
15.

Systematic analysis of alternative first exons in plant genomes.

Chen WH, Lv G, Lv C, Zeng C, Hu S.

BMC Plant Biol. 2007 Oct 17;7:55.

PMID:
17941993
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Changes in alternative splicing of human and mouse genes are accompanied by faster evolution of constitutive exons.

Cusack BP, Wolfe KH.

Mol Biol Evol. 2005 Nov;22(11):2198-208. Epub 2005 Jul 27.

PMID:
16049198
[PubMed - indexed for MEDLINE]
Free Article
17.

Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses.

Li C, Rudi H, Stockinger EJ, Cheng H, Cao M, Fox SE, Mockler TC, Westereng B, Fjellheim S, Rognli OA, Sandve SR.

BMC Plant Biol. 2012 May 8;12:65. doi: 10.1186/1471-2229-12-65.

PMID:
22569006
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences.

Huo N, Lazo GR, Vogel JP, You FM, Ma Y, Hayden DM, Coleman-Derr D, Hill TA, Dvorak J, Anderson OD, Luo MC, Gu YQ.

Funct Integr Genomics. 2008 May;8(2):135-47. Epub 2007 Nov 6.

PMID:
17985162
[PubMed - indexed for MEDLINE]
19.

Sequence organization and evolutionary dynamics of Brachypodium-specific centromere retrotransposons.

Qi LL, Wu JJ, Friebe B, Qian C, Gu YQ, Fu DL, Gill BS.

Chromosome Res. 2013 Aug;21(5):507-21. doi: 10.1007/s10577-013-9378-4. Epub 2013 Aug 17.

PMID:
23955173
[PubMed - indexed for MEDLINE]
20.

Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.

Higgins JA, Bailey PC, Laurie DA.

PLoS One. 2010 Apr 19;5(4):e10065. doi: 10.1371/journal.pone.0010065.

PMID:
20419097
[PubMed - indexed for MEDLINE]
Free PMC Article

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