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Results: 1 to 20 of 122

1.

Deep whole-genome sequencing of 100 southeast Asian Malays.

Wong LP, Ong RT, Poh WT, Liu X, Chen P, Li R, Lam KK, Pillai NE, Sim KS, Xu H, Sim NL, Teo SM, Foo JN, Tan LW, Lim Y, Koo SH, Gan LS, Cheng CY, Wee S, Yap EP, Ng PC, Lim WY, Soong R, Wenk MR, Aung T, Wong TY, Khor CC, Little P, Chia KS, Teo YY.

Am J Hum Genet. 2013 Jan 10;92(1):52-66. doi: 10.1016/j.ajhg.2012.12.005. Epub 2013 Jan 3.

PMID:
23290073
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Evaluating the coverage and potential of imputing the exome microarray with next-generation imputation using the 1000 genomes project.

Tantoso E, Wong LP, Li B, Saw WY, Xu W, Little P, Ong RT, Teo YY.

PLoS One. 2014 Sep 9;9(9):e106681. doi: 10.1371/journal.pone.0106681. eCollection 2014.

PMID:
25203698
[PubMed - in process]
Free PMC Article
3.

Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection.

Stubbs A, McClellan EA, Horsman S, Hiltemann SD, Palli I, Nouwens S, Koning AH, Hoogland F, Reumers J, Heijsman D, Swagemakers S, Kremer A, Meijerink J, Lambrechts D, van der Spek PJ.

J Clin Bioinforma. 2012 Nov 19;2(1):19. doi: 10.1186/2043-9113-2-19.

PMID:
23164068
[PubMed]
Free PMC Article
4.

Singapore Genome Variation Project: a haplotype map of three Southeast Asian populations.

Teo YY, Sim X, Ong RT, Tan AK, Chen J, Tantoso E, Small KS, Ku CS, Lee EJ, Seielstad M, Chia KS.

Genome Res. 2009 Nov;19(11):2154-62. doi: 10.1101/gr.095000.109. Epub 2009 Aug 21.

PMID:
19700652
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Low-pass genome-wide sequencing and variant inference using identity-by-descent in an isolated human population.

Gusev A, Shah MJ, Kenny EE, Ramachandran A, Lowe JK, Salit J, Lee CC, Levandowsky EC, Weaver TN, Doan QC, Peckham HE, McLaughlin SF, Lyons MR, Sheth VN, Stoffel M, De La Vega FM, Friedman JM, Breslow JL, Pe'er I.

Genetics. 2012 Feb;190(2):679-89. doi: 10.1534/genetics.111.134874. Epub 2011 Nov 30.

PMID:
22135348
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Estimating the number of unseen variants in the human genome.

Ionita-Laza I, Lange C, M Laird N.

Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5008-13. doi: 10.1073/pnas.0807815106. Epub 2009 Mar 10.

PMID:
19276111
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

FTO variants are associated with obesity in the Chinese and Malay populations in Singapore.

Tan JT, Dorajoo R, Seielstad M, Sim XL, Ong RT, Chia KS, Wong TY, Saw SM, Chew SK, Aung T, Tai ES.

Diabetes. 2008 Oct;57(10):2851-7. doi: 10.2337/db08-0214. Epub 2008 Jul 3.

PMID:
18599522
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Rare and common regulatory variation in population-scale sequenced human genomes.

Montgomery SB, Lappalainen T, Gutierrez-Arcelus M, Dermitzakis ET.

PLoS Genet. 2011 Jul;7(7):e1002144. doi: 10.1371/journal.pgen.1002144. Epub 2011 Jul 21.

PMID:
21811411
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Detection of identity by descent using next-generation whole genome sequencing data.

Su SY, Kasberger J, Baranzini S, Byerley W, Liao W, Oksenberg J, Sherr E, Jorgenson E.

BMC Bioinformatics. 2012 Jun 6;13:121. doi: 10.1186/1471-2105-13-121.

PMID:
22672699
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Distribution of the FcgammaRIIIa 176 F/V polymorphism amongst healthy Chinese, Malays and Asian Indians in Singapore.

Chong KT, Ho WF, Koo SH, Thompson P, Lee EJ.

Br J Clin Pharmacol. 2007 Mar;63(3):328-32. Epub 2006 Sep 19.

PMID:
16981896
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Integrating common and rare genetic variation in diverse human populations.

International HapMap 3 Consortium, Altshuler DM, Gibbs RA, Peltonen L, Altshuler DM, Gibbs RA, Peltonen L, Dermitzakis E, Schaffner SF, Yu F, Peltonen L, Dermitzakis E, Bonnen PE, Altshuler DM, Gibbs RA, de Bakker PI, Deloukas P, Gabriel SB, Gwilliam R, Hunt S, Inouye M, Jia X, Palotie A, Parkin M, Whittaker P, Yu F, Chang K, Hawes A, Lewis LR, Ren Y, Wheeler D, Gibbs RA, Muzny DM, Barnes C, Darvishi K, Hurles M, Korn JM, Kristiansson K, Lee C, McCarrol SA, Nemesh J, Dermitzakis E, Keinan A, Montgomery SB, Pollack S, Price AL, Soranzo N, Bonnen PE, Gibbs RA, Gonzaga-Jauregui C, Keinan A, Price AL, Yu F, Anttila V, Brodeur W, Daly MJ, Leslie S, McVean G, Moutsianas L, Nguyen H, Schaffner SF, Zhang Q, Ghori MJ, McGinnis R, McLaren W, Pollack S, Price AL, Schaffner SF, Takeuchi F, Grossman SR, Shlyakhter I, Hostetter EB, Sabeti PC, Adebamowo CA, Foster MW, Gordon DR, Licinio J, Manca MC, Marshall PA, Matsuda I, Ngare D, Wang VO, Reddy D, Rotimi CN, Royal CD, Sharp RR, Zeng C, Brooks LD, McEwen JE.

Nature. 2010 Sep 2;467(7311):52-8. doi: 10.1038/nature09298.

PMID:
20811451
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Sequencing and analysis of a South Asian-Indian personal genome.

Gupta R, Ratan A, Rajesh C, Chen R, Kim HL, Burhans R, Miller W, Santhosh S, Davuluri RV, Butte AJ, Schuster SC, Seshagiri S, Thomas G.

BMC Genomics. 2012 Aug 31;13:440. doi: 10.1186/1471-2164-13-440.

PMID:
22938532
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies.

Hao K, Chudin E, McElwee J, Schadt EE.

BMC Genet. 2009 Jun 16;10:27. doi: 10.1186/1471-2156-10-27.

PMID:
19531258
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Insights into the genetic structure and diversity of 38 South Asian Indians from deep whole-genome sequencing.

Wong LP, Lai JK, Saw WY, Ong RT, Cheng AY, Pillai NE, Liu X, Xu W, Chen P, Foo JN, Tan LW, Koo SH, Soong R, Wenk MR, Lim WY, Khor CC, Little P, Chia KS, Teo YY.

PLoS Genet. 2014 May 15;10(5):e1004377. doi: 10.1371/journal.pgen.1004377. eCollection 2014 May.

PMID:
24832686
[PubMed - in process]
Free PMC Article
15.

Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals.

Cheng AY, Teo YY, Ong RT.

Bioinformatics. 2014 Jun 15;30(12):1707-13. doi: 10.1093/bioinformatics/btu067. Epub 2014 Feb 19.

PMID:
24558117
[PubMed - in process]
16.

Genome-wide landscapes of human local adaptation in Asia.

Qian W, Deng L, Lu D, Xu S.

PLoS One. 2013;8(1):e54224. doi: 10.1371/journal.pone.0054224. Epub 2013 Jan 22.

PMID:
23349834
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genotype calling and phasing using next-generation sequencing reads and a haplotype scaffold.

Menelaou A, Marchini J.

Bioinformatics. 2013 Jan 1;29(1):84-91. doi: 10.1093/bioinformatics/bts632. Epub 2012 Oct 23.

PMID:
23093610
[PubMed - indexed for MEDLINE]
Free Article
18.

Genotype imputation for African Americans using data from HapMap phase II versus 1000 genomes projects.

Sung YJ, Gu CC, Tiwari HK, Arnett DK, Broeckel U, Rao DC.

Genet Epidemiol. 2012 Jul;36(5):508-16. doi: 10.1002/gepi.21647. Epub 2012 May 29.

PMID:
22644746
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

SgD-CNV, a database for common and rare copy number variants in three Asian populations.

Xu H, Poh WT, Sim X, Ong RT, Suo C, Tay WT, Khor CC, Seielstad M, Liu J, Aung T, Tai ES, Wong TY, Chia KS, Teo YY.

Hum Mutat. 2011 Dec;32(12):1341-9. doi: 10.1002/humu.21601. Epub 2011 Sep 30.

PMID:
21882294
[PubMed - indexed for MEDLINE]
20.

High-throughput sequencing of complete human mtDNA genomes from the Philippines.

Gunnarsdóttir ED, Li M, Bauchet M, Finstermeier K, Stoneking M.

Genome Res. 2011 Jan;21(1):1-11. doi: 10.1101/gr.107615.110. Epub 2010 Dec 8.

PMID:
21147912
[PubMed - indexed for MEDLINE]
Free PMC Article

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