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Results: 1 to 20 of 104

1.

Nonlinear projection methods for visualizing Barcode data and application on two data sets.

Olteanu M, Nicolas V, Schaeffer B, Denys C, Missoup AD, Kennis J, Larédo C.

Mol Ecol Resour. 2013 Nov;13(6):976-90. doi: 10.1111/1755-0998.12047. Epub 2013 Jan 3.

PMID:
23286377
[PubMed - indexed for MEDLINE]
2.

Ranked centroid projection: a data visualization approach with self-organizing maps.

Yen GG, Wu Z.

IEEE Trans Neural Netw. 2008 Feb;19(2):245-59. doi: 10.1109/TNN.2007.905858.

PMID:
18269956
[PubMed - indexed for MEDLINE]
3.

Phylogenetic reconstruction and DNA barcoding for closely related pine moth species (Dendrolimus) in China with multiple gene markers.

Dai QY, Gao Q, Wu CS, Chesters D, Zhu CD, Zhang AB.

PLoS One. 2012;7(4):e32544. doi: 10.1371/journal.pone.0032544. Epub 2012 Apr 3.

PMID:
22509245
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A SOM projection technique with the growing structure for visualizing high-dimensional data.

Wu Z, Yen GG.

Int J Neural Syst. 2003 Oct;13(5):353-65.

PMID:
14652875
[PubMed - indexed for MEDLINE]
5.

DNA barcoding of Northern Nearctic Muscidae (Diptera) reveals high correspondence between morphological and molecular species limits.

Renaud AK, Savage J, Adamowicz SJ.

BMC Ecol. 2012 Nov 23;12:24. doi: 10.1186/1472-6785-12-24.

PMID:
23173946
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Improving cluster visualization in self-organizing maps: application in gene expression data analysis.

Fernandez EA, Balzarini M.

Comput Biol Med. 2007 Dec;37(12):1677-89. Epub 2007 Jun 4.

PMID:
17544390
[PubMed - indexed for MEDLINE]
7.

Checking the projection display of multivariate data with colored graphs.

Bienfait B, Gasteiger J.

J Mol Graph Model. 1997 Aug;15(4):203-15, 254-8.

PMID:
9524929
[PubMed - indexed for MEDLINE]
8.

Self-Organizing Map (SOM) unveils and visualizes hidden sequence characteristics of a wide range of eukaryote genomes.

Abe T, Sugawara H, Kanaya S, Kinouchi M, Ikemura T.

Gene. 2006 Jan 3;365:27-34. Epub 2005 Dec 20.

PMID:
16364569
[PubMed - indexed for MEDLINE]
9.

A comprehensive DNA barcode library for the looper moths (Lepidoptera: Geometridae) of British Columbia, Canada.

deWaard JR, Hebert PD, Humble LM.

PLoS One. 2011 Mar 28;6(3):e18290. doi: 10.1371/journal.pone.0018290.

PMID:
21464900
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Bios2mds: an R package for comparing orthologous protein families by metric multidimensional scaling.

Pelé J, Bécu JM, Abdi H, Chabbert M.

BMC Bioinformatics. 2012 Jun 15;13:133. doi: 10.1186/1471-2105-13-133.

PMID:
22702410
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

PRSOM: a new visualization method by hybridizing multidimensional scaling and self-organizing map.

Wu S, Chow TW.

IEEE Trans Neural Netw. 2005 Nov;16(6):1362-80.

PMID:
16342481
[PubMed - indexed for MEDLINE]
12.

Topographic mapping of large dissimilarity data sets.

Hammer B, Hasenfuss A.

Neural Comput. 2010 Sep 1;22(9):2229-84. doi: 10.1162/NECO_a_00012.

PMID:
20569180
[PubMed - indexed for MEDLINE]
13.

Fast algorithm and implementation of dissimilarity self-organizing maps.

Conan-Guez B, Rossi F, El Golli A.

Neural Netw. 2006 Jul-Aug;19(6-7):855-63. Epub 2006 Jun 12.

PMID:
16774730
[PubMed - indexed for MEDLINE]
14.

Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon genera.

Suwannasai N, Martín MP, Phosri C, Sihanonth P, Whalley AJ, Spouge JL.

PLoS One. 2013;8(2):e54529. doi: 10.1371/journal.pone.0054529. Epub 2013 Feb 4.

PMID:
23390499
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

DNA barcode sequencing from old type specimens as a tool in taxonomy: a case study in the diverse genus Eois (Lepidoptera: Geometridae).

Strutzenberger P, Brehm G, Fiedler K.

PLoS One. 2012;7(11):e49710. doi: 10.1371/journal.pone.0049710. Epub 2012 Nov 21.

PMID:
23185414
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Trustworthiness and metrics in visualizing similarity of gene expression.

Kaski S, Nikkilä J, Oja M, Venna J, Törönen P, Castrén E.

BMC Bioinformatics. 2003 Oct 13;4:48.

PMID:
14552657
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Advanced visualization of self-organizing maps with vector fields.

Pölzlbauer G, Dittenbach M, Rauber A.

Neural Netw. 2006 Jul-Aug;19(6-7):911-22. Epub 2006 Jun 19.

PMID:
16782304
[PubMed - indexed for MEDLINE]
18.

Filling gaps in biodiversity knowledge for macrofungi: contributions and assessment of an herbarium collection DNA barcode sequencing project.

Osmundson TW, Robert VA, Schoch CL, Baker LJ, Smith A, Robich G, Mizzan L, Garbelotto MM.

PLoS One. 2013 Apr 30;8(4):e62419. doi: 10.1371/journal.pone.0062419. Print 2013.

PMID:
23638077
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Alignment-free analysis of barcode sequences by means of compression-based methods.

La Rosa M, Fiannaca A, Rizzo R, Urso A.

BMC Bioinformatics. 2013;14 Suppl 7:S4. doi: 10.1186/1471-2105-14-S7-S4. Epub 2013 Apr 22.

PMID:
23815444
[PubMed - indexed for MEDLINE]
Free PMC Article

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