Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 101

1.

Assignment of EC numbers to enzymatic reactions with reaction difference fingerprints.

Hu QN, Zhu H, Li X, Zhang M, Deng Z, Yang X, Deng Z.

PLoS One. 2012;7(12):e52901. doi: 10.1371/journal.pone.0052901. Epub 2012 Dec 28.

PMID:
23285222
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions.

Kotera M, Okuno Y, Hattori M, Goto S, Kanehisa M.

J Am Chem Soc. 2004 Dec 22;126(50):16487-98.

PMID:
15600352
[PubMed - indexed for MEDLINE]
3.

Genome-scale classification of metabolic reactions and assignment of EC numbers with self-organizing maps.

Latino DA, Zhang QY, Aires-de-Sousa J.

Bioinformatics. 2008 Oct 1;24(19):2236-44. doi: 10.1093/bioinformatics/btn405. Epub 2008 Aug 1.

PMID:
18676416
[PubMed - indexed for MEDLINE]
Free Article
4.

Assignment of EC numbers to enzymatic reactions with MOLMAP reaction descriptors and random forests.

Latino DA, Aires-de-Sousa J.

J Chem Inf Model. 2009 Jul;49(7):1839-46. doi: 10.1021/ci900104b.

PMID:
19588957
[PubMed - indexed for MEDLINE]
5.

Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism.

Saigo H, Hattori M, Kashima H, Tsuda K.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S31. doi: 10.1186/1471-2105-11-S1-S31.

PMID:
20122204
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

ECOH: an enzyme commission number predictor using mutual information and a support vector machine.

Matsuta Y, Ito M, Tohsato Y.

Bioinformatics. 2013 Feb 1;29(3):365-72. doi: 10.1093/bioinformatics/bts700. Epub 2012 Dec 5.

PMID:
23220570
[PubMed - indexed for MEDLINE]
Free Article
7.

Generalized reaction patterns for prediction of unknown enzymatic reactions.

Shimizu Y, Hattori M, Goto S, Kanehisa M.

Genome Inform. 2008;20:149-58.

PMID:
19425130
[PubMed - indexed for MEDLINE]
8.

Automatic assignment of reaction operators to enzymatic reactions.

Leber M, Egelhofer V, Schomburg I, Schomburg D.

Bioinformatics. 2009 Dec 1;25(23):3135-42. doi: 10.1093/bioinformatics/btp549. Epub 2009 Sep 25.

PMID:
19783831
[PubMed - indexed for MEDLINE]
Free Article
9.

E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.

Yamanishi Y, Hattori M, Kotera M, Goto S, Kanehisa M.

Bioinformatics. 2009 Jun 15;25(12):i179-86. doi: 10.1093/bioinformatics/btp223.

PMID:
19477985
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function.

Almonacid DE, Yera ER, Mitchell JB, Babbitt PC.

PLoS Comput Biol. 2010 Mar 12;6(3):e1000700. doi: 10.1371/journal.pcbi.1000700.

PMID:
20300652
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Automatic assignment of EC numbers.

Egelhofer V, Schomburg I, Schomburg D.

PLoS Comput Biol. 2010 Jan 29;6(1):e1000661. doi: 10.1371/journal.pcbi.1000661.

PMID:
20126531
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Classification of chemical reactions and chemoinformatic processing of enzymatic transformations.

Latino DA, Aires-de-Sousa J.

Methods Mol Biol. 2011;672:325-40. doi: 10.1007/978-1-60761-839-3_13.

PMID:
20838975
[PubMed - indexed for MEDLINE]
13.

Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers.

Green ML, Karp PD.

Nucleic Acids Res. 2005 Jul 20;33(13):4035-9. Print 2005.

PMID:
16034025
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

LIGAND database for enzymes, compounds and reactions.

Goto S, Nishioka T, Kanehisa M.

Nucleic Acids Res. 1999 Jan 1;27(1):377-9.

PMID:
9847234
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

EC-BLAST: a tool to automatically search and compare enzyme reactions.

Rahman SA, Cuesta SM, Furnham N, Holliday GL, Thornton JM.

Nat Methods. 2014 Feb;11(2):171-4. doi: 10.1038/nmeth.2803. Epub 2014 Jan 12.

PMID:
24412978
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genomic fingerprinting using arbitrarily primed PCR and a matrix of pairwise combinations of primers.

Welsh J, McClelland M.

Nucleic Acids Res. 1991 Oct 11;19(19):5275-9.

PMID:
1923811
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evolutionary dynamics of enzymes.

Demetrius L.

Protein Eng. 1995 Aug;8(8):791-800.

PMID:
8637848
[PubMed - indexed for MEDLINE]
18.
19.

Evolutionary fingerprinting of genes.

Pond SL, Scheffler K, Gravenor MB, Poon AF, Frost SD.

Mol Biol Evol. 2010 Mar;27(3):520-36. doi: 10.1093/molbev/msp260. Epub 2009 Oct 28.

PMID:
19864470
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

An algorithm for clustering cDNA fingerprints.

Hartuv E, Schmitt AO, Lange J, Meier-Ewert S, Lehrach H, Shamir R.

Genomics. 2000 Jun 15;66(3):249-56.

PMID:
10873379
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk