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Results: 1 to 20 of 99

1.

Bayesian prediction of bacterial growth temperature range based on genome sequences.

Jensen DB, Vesth TC, Hallin PF, Pedersen AG, Ussery DW.

BMC Genomics. 2012;13 Suppl 7:S3. doi: 10.1186/1471-2164-13-S7-S3. Epub 2012 Dec 13.

PMID:
23282160
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Amino acid coupling patterns in thermophilic proteins.

Liang HK, Huang CM, Ko MT, Hwang JK.

Proteins. 2005 Apr 1;59(1):58-63.

PMID:
15688447
[PubMed - indexed for MEDLINE]
3.

Analysis of tRNA composition and folding in psychrophilic, mesophilic and thermophilic genomes: indications for thermal adaptation.

Dutta A, Chaudhuri K.

FEMS Microbiol Lett. 2010 Apr;305(2):100-8. doi: 10.1111/j.1574-6968.2010.01922.x. Epub 2010 Feb 5.

PMID:
20659165
[PubMed - indexed for MEDLINE]
4.

Comparative proteome analysis of psychrophilic versus mesophilic bacterial species: Insights into the molecular basis of cold adaptation of proteins.

Metpally RP, Reddy BV.

BMC Genomics. 2009 Jan 8;10:11. doi: 10.1186/1471-2164-10-11.

PMID:
19133128
[PubMed - indexed for MEDLINE]
Free PMC Article
5.
6.

The stability of thermophilic proteins: a study based on comprehensive genome comparison.

Das R, Gerstein M.

Funct Integr Genomics. 2000 May;1(1):76-88.

PMID:
11793224
[PubMed - indexed for MEDLINE]
7.

Capturing whole-genome characteristics in short sequences using a naïve Bayesian classifier.

Sandberg R, Winberg G, Bränden CI, Kaske A, Ernberg I, Cöster J.

Genome Res. 2001 Aug;11(8):1404-9.

PMID:
11483581
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content.

Singer GA, Hickey DA.

Gene. 2003 Oct 23;317(1-2):39-47.

PMID:
14604790
[PubMed - indexed for MEDLINE]
9.

A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes.

Röske K, Foecking MF, Yooseph S, Glass JI, Calcutt MJ, Wise KS.

BMC Genomics. 2010 Jul 13;11:430. doi: 10.1186/1471-2164-11-430.

PMID:
20626840
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

[Phylogenetic diversity and cold-adaptive hydrolytic enzymes of culturable psychrophilic bacteria associated with sea ice from high latitude ocean, Artic].

Yu Y, Li HR, Chen B, Zeng YX, He JF.

Wei Sheng Wu Xue Bao. 2006 Apr;46(2):184-90. Chinese.

PMID:
16736573
[PubMed - indexed for MEDLINE]
11.

Environment specific substitution tables for thermophilic proteins.

Mizuguchi K, Sele M, Cubellis MV.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S15.

PMID:
17430559
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Gene sequences useful for predicting relatedness of whole genomes in bacteria.

Zeigler DR.

Int J Syst Evol Microbiol. 2003 Nov;53(Pt 6):1893-900.

PMID:
14657120
[PubMed - indexed for MEDLINE]
Free Article
13.

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.

Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, D'haeseleer P, Zemla A, Singer M, Lapidus A, Nolan M, Copeland A, Han C, Chen F, Cheng JF, Lucas S, Kerfeld C, Lang E, Gronow S, Chain P, Bruce D, Rubin EM, Kyrpides NC, Klenk HP, Eisen JA.

Nature. 2009 Dec 24;462(7276):1056-60. doi: 10.1038/nature08656.

PMID:
20033048
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Shewanella spp. genomic evolution for a cold marine lifestyle and in-situ explosive biodegradation.

Zhao JS, Deng Y, Manno D, Hawari J.

PLoS One. 2010 Feb 8;5(2):e9109. doi: 10.1371/journal.pone.0009109.

PMID:
20174598
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evidence for existence of "mesotogas," members of the order Thermotogales adapted to low-temperature environments.

Nesbø CL, Dlutek M, Zhaxybayeva O, Doolittle WF.

Appl Environ Microbiol. 2006 Jul;72(7):5061-8.

PMID:
16820506
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

On the molecular mechanism of GC content variation among eubacterial genomes.

Wu H, Zhang Z, Hu S, Yu J.

Biol Direct. 2012 Jan 10;7:2. doi: 10.1186/1745-6150-7-2.

PMID:
22230424
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Discrimination of mesophilic and thermophilic proteins using machine learning algorithms.

Gromiha MM, Suresh MX.

Proteins. 2008 Mar;70(4):1274-9.

PMID:
17876820
[PubMed - indexed for MEDLINE]
18.

Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures.

Nakashima H, Fukuchi S, Nishikawa K.

J Biochem. 2003 Apr;133(4):507-13.

PMID:
12761299
[PubMed - indexed for MEDLINE]
Free Article
19.

Gene-centric association analysis for the correlation between the guanine-cytosine content levels and temperature range conditions of prokaryotic species.

Zheng H, Wu H.

BMC Bioinformatics. 2010 Dec 14;11 Suppl 11:S7. doi: 10.1186/1471-2105-11-S11-S7.

PMID:
21172057
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method.

Burger L, van Nimwegen E.

Mol Syst Biol. 2008;4:165. doi: 10.1038/msb4100203. Epub 2008 Feb 12.

PMID:
18277381
[PubMed - indexed for MEDLINE]
Free PMC Article

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