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Results: 1 to 20 of 224

1.

IntPath--an integrated pathway gene relationship database for model organisms and important pathogens.

Zhou H, Jin J, Zhang H, Yi B, Wozniak M, Wong L.

BMC Syst Biol. 2012;6 Suppl 2:S2. doi: 10.1186/1752-0509-6-S2-S2. Epub 2012 Dec 12.

PMID:
23282057
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases.

Yang JO, Hwang S, Oh J, Bhak J, Sohn TK.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S19. doi: 10.1186/1471-2105-9-S12-S19.

PMID:
19091018
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API.

Kono N, Arakawa K, Ogawa R, Kido N, Oshita K, Ikegami K, Tamaki S, Tomita M.

PLoS One. 2009 Nov 11;4(11):e7710. doi: 10.1371/journal.pone.0007710.

PMID:
19907644
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

BioGRID: a general repository for interaction datasets.

Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D535-9.

PMID:
16381927
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

PESTAS: a web server for EST analysis and sequence mining.

Nam SH, Kim DW, Jung TS, Choi YS, Kim DW, Choi HS, Choi SH, Park HS.

Bioinformatics. 2009 Jul 15;25(14):1846-8. doi: 10.1093/bioinformatics/btp293. Epub 2009 May 4.

PMID:
19414531
[PubMed - indexed for MEDLINE]
Free Article
6.

Pathway Commons, a web resource for biological pathway data.

Cerami EG, Gross BE, Demir E, Rodchenkov I, Babur O, Anwar N, Schultz N, Bader GD, Sander C.

Nucleic Acids Res. 2011 Jan;39(Database issue):D685-90. doi: 10.1093/nar/gkq1039. Epub 2010 Nov 10.

PMID:
21071392
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets.

Zhou H, Wong L.

BMC Genomics. 2011 Nov 30;12 Suppl 3:S20. doi: 10.1186/1471-2164-12-S3-S20. Epub 2011 Nov 30.

PMID:
22369691
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Consistency, comprehensiveness, and compatibility of pathway databases.

Soh D, Dong D, Guo Y, Wong L.

BMC Bioinformatics. 2010 Sep 7;11:449. doi: 10.1186/1471-2105-11-449.

PMID:
20819233
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Quality controls in integrative approaches to detect errors and inconsistencies in biological databases.

Ghisalberti G, Masseroli M, Tettamanti L.

J Integr Bioinform. 2010 Mar 25;7(3). doi: 10.2390/biecoll-jib-2010-119.

PMID:
20375464
[PubMed - indexed for MEDLINE]
10.

HPD: an online integrated human pathway database enabling systems biology studies.

Chowbina SR, Wu X, Zhang F, Li PM, Pandey R, Kasamsetty HN, Chen JY.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S5. doi: 10.1186/1471-2105-10-S11-S5.

PMID:
19811689
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The BioGRID interaction database: 2013 update.

Chatr-Aryamontri A, Breitkreutz BJ, Heinicke S, Boucher L, Winter A, Stark C, Nixon J, Ramage L, Kolas N, O'Donnell L, Reguly T, Breitkreutz A, Sellam A, Chen D, Chang C, Rust J, Livstone M, Oughtred R, Dolinski K, Tyers M.

Nucleic Acids Res. 2013 Jan;41(Database issue):D816-23. doi: 10.1093/nar/gks1158. Epub 2012 Nov 30.

PMID:
23203989
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Data mining in the MetaCyc family of pathway databases.

Karp PD, Paley S, Altman T.

Methods Mol Biol. 2013;939:183-200. doi: 10.1007/978-1-62703-107-3_12.

PMID:
23192547
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.

PMID:
16569235
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

An editor for pathway drawing and data visualization in the Biopathways Workbench.

Byrnes RW, Cotter D, Maer A, Li J, Nadeau D, Subramaniam S.

BMC Syst Biol. 2009 Oct 2;3:99. doi: 10.1186/1752-0509-3-99.

PMID:
19799790
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

HAPPI: an online database of comprehensive human annotated and predicted protein interactions.

Chen JY, Mamidipalli S, Huan T.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S16. doi: 10.1186/1471-2164-10-S1-S16.

PMID:
19594875
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.

PMID:
15686593
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

GeneSeer: a sage for gene names and genomic resources.

Olson AJ, Tully T, Sachidanandam R.

BMC Genomics. 2005 Sep 21;6:134.

PMID:
16176584
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.

PMID:
17980028
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The outcomes of pathway database computations depend on pathway ontology.

Green ML, Karp PD.

Nucleic Acids Res. 2006 Aug 7;34(13):3687-97. Print 2006.

PMID:
16893953
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Columba: an integrated database of proteins, structures, and annotations.

Trissl S, Rother K, Müller H, Steinke T, Koch I, Preissner R, Frömmel C, Leser U.

BMC Bioinformatics. 2005 Mar 31;6:81.

PMID:
15801979
[PubMed - indexed for MEDLINE]
Free PMC Article

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