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Items: 1 to 20 of 68

1.

Protein structure validation using a semi-empirical method.

Lahiri T, Singh K, Pal MK, Verma G.

Bioinformation. 2012;8(20):984-7. doi: 10.6026/97320630008984. Epub 2012 Oct 13.

2.

Derivation of a scoring function for crystal structure prediction.

Apostolakis J, Hofmann DW, Lengauer T.

Acta Crystallogr A. 2001 Jul;57(Pt 4):442-50. Epub 2001 Jun 21.

PMID:
11418755
3.

SELECTpro: effective protein model selection using a structure-based energy function resistant to BLUNDERs.

Randall A, Baldi P.

BMC Struct Biol. 2008 Dec 3;8:52. doi: 10.1186/1472-6807-8-52.

4.

Bootstrap-based consensus scoring method for protein-ligand docking.

Fukunishi H, Teramoto R, Takada T, Shimada J.

J Chem Inf Model. 2008 May;48(5):988-96. doi: 10.1021/ci700204v. Epub 2008 Apr 22.

PMID:
18426197
5.
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7.

Protein structure evaluation using an all-atom energy based empirical scoring function.

Narang P, Bhushan K, Bose S, Jayaram B.

J Biomol Struct Dyn. 2006 Feb;23(4):385-406.

PMID:
16363875
8.

On two novel parameters for validation of predictive QSAR models.

Pratim Roy P, Paul S, Mitra I, Roy K.

Molecules. 2009 Apr 29;14(5):1660-701. doi: 10.3390/molecules14051660.

9.
10.

Simultaneous beam geometry and intensity map optimization in intensity-modulated radiation therapy.

Lee EK, Fox T, Crocker I.

Int J Radiat Oncol Biol Phys. 2006 Jan 1;64(1):301-20. Epub 2005 Nov 14.

PMID:
16289912
11.

Protein secondary structure prediction with SPARROW.

Bettella F, Rasinski D, Knapp EW.

J Chem Inf Model. 2012 Feb 27;52(2):545-56. doi: 10.1021/ci200321u. Epub 2012 Jan 23.

PMID:
22224407
12.

[The estimation of premorbid intelligence levels in French speakers].

Mackinnon A, Mulligan R.

Encephale. 2005 Jan-Feb;31(1 Pt 1):31-43. French.

PMID:
15971638
13.

Protein binding site prediction using an empirical scoring function.

Liang S, Zhang C, Liu S, Zhou Y.

Nucleic Acids Res. 2006 Aug 7;34(13):3698-707. Print 2006.

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15.

SeleX-CS: a new consensus scoring algorithm for hit discovery and lead optimization.

Bar-Haim S, Aharon A, Ben-Moshe T, Marantz Y, Senderowitz H.

J Chem Inf Model. 2009 Mar;49(3):623-33. doi: 10.1021/ci800335j.

PMID:
19231809
16.

Local interactions in protein folding determined through an inverse folding model.

Bastolla U, Porto M, Ortíz AR.

Proteins. 2008 Apr;71(1):278-99. Erratum in: Proteins. 2008 Sep;72(4):1377.

PMID:
17932940
17.

Rational design of ion force fields based on thermodynamic solvation properties.

Horinek D, Mamatkulov SI, Netz RR.

J Chem Phys. 2009 Mar 28;130(12):124507. doi: 10.1063/1.3081142.

PMID:
19334851
18.
19.

A conceptual model integrating spatial information to assess target volume coverage for IMRT treatment planning.

Chao KS, Blanco AI, Dempsey JF.

Int J Radiat Oncol Biol Phys. 2003 Aug 1;56(5):1438-49.

PMID:
12873690
20.

PLASS: protein-ligand affinity statistical score--a knowledge-based force-field model of interaction derived from the PDB.

Ozrin VD, Subbotin MV, Nikitin SM.

J Comput Aided Mol Des. 2004 Apr;18(4):261-70.

PMID:
15562990
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