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Results: 1 to 20 of 281

1.

Development of high-throughput SNP-based genotyping in Acacia auriculiformis x A. mangium hybrids using short-read transcriptome data.

Wong MM, Cannon CH, Wickneswari R.

BMC Genomics. 2012 Dec 24;13:726. doi: 10.1186/1471-2164-13-726.

PMID:
23265623
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing.

Wong MM, Cannon CH, Wickneswari R.

BMC Genomics. 2011 Jul 5;12:342. doi: 10.1186/1471-2164-12-342.

PMID:
21729267
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

High-throughput SNP genotyping in Cucurbita pepo for map construction and quantitative trait loci mapping.

Esteras C, Gómez P, Monforte AJ, Blanca J, Vicente-Dólera N, Roig C, Nuez F, Picó B.

BMC Genomics. 2012 Feb 22;13:80. doi: 10.1186/1471-2164-13-80.

PMID:
22356647
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake.

Milano I, Babbucci M, Panitz F, Ogden R, Nielsen RO, Taylor MI, Helyar SJ, Carvalho GR, Espiñeira M, Atanassova M, Tinti F, Maes GE, Patarnello T; FishPopTrace Consortium, Bargelloni L.

PLoS One. 2011;6(11):e28008. doi: 10.1371/journal.pone.0028008. Epub 2011 Nov 22.

PMID:
22132191
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

SNP discovery using Next Generation Transcriptomic Sequencing in Atlantic herring (Clupea harengus).

Helyar SJ, Limborg MT, Bekkevold D, Babbucci M, van Houdt J, Maes GE, Bargelloni L, Nielsen RO, Taylor MI, Ogden R, Cariani A, Carvalho GR, Consortium F, Panitz F.

PLoS One. 2012;7(8):e42089. doi: 10.1371/journal.pone.0042089. Epub 2012 Aug 7.

PMID:
22879907
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout.

Boussaha M, Guyomard R, Cabau C, Esquerré D, Quillet E.

BMC Genomics. 2012 Jun 13;13:238. doi: 10.1186/1471-2164-13-238.

PMID:
22694767
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

SNP discovery in European anchovy (Engraulis encrasicolus, L) by high-throughput transcriptome and genome sequencing.

Montes I, Conklin D, Albaina A, Creer S, Carvalho GR, Santos M, Estonba A.

PLoS One. 2013 Aug 1;8(8):e70051. doi: 10.1371/journal.pone.0070051. Print 2013.

PMID:
23936375
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.).

Gaur R, Azam S, Jeena G, Khan AW, Choudhary S, Jain M, Yadav G, Tyagi AK, Chattopadhyay D, Bhatia S.

DNA Res. 2012 Oct;19(5):357-73. doi: 10.1093/dnares/dss018. Epub 2012 Aug 3.

PMID:
22864163
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Transcriptome-wide single nucleotide polymorphisms (SNPs) for abalone (Haliotis midae): validation and application using GoldenGate medium-throughput genotyping assays.

Bester-Van Der Merwe A, Blaauw S, Du Plessis J, Roodt-Wilding R.

Int J Mol Sci. 2013 Sep 23;14(9):19341-60. doi: 10.3390/ijms140919341.

PMID:
24065109
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A transcriptome map of perennial ryegrass (Lolium perenne L.).

Studer B, Byrne S, Nielsen RO, Panitz F, Bendixen C, Islam MS, Pfeifer M, Lübberstedt T, Asp T.

BMC Genomics. 2012 Apr 18;13:140. doi: 10.1186/1471-2164-13-140.

PMID:
22513206
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The development and characterization of a 60K SNP chip for chicken.

Groenen MA, Megens HJ, Zare Y, Warren WC, Hillier LW, Crooijmans RP, Vereijken A, Okimoto R, Muir WM, Cheng HH.

BMC Genomics. 2011 May 31;12(1):274. doi: 10.1186/1471-2164-12-274.

PMID:
21627800
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.

You FM, Deal KR, Wang J, Britton MT, Fass JN, Lin D, Dandekar AM, Leslie CA, Aradhya M, Luo MC, Dvorak J.

BMC Genomics. 2012 Jul 31;13:354. doi: 10.1186/1471-2164-13-354.

PMID:
22849334
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?

Lepoittevin C, Frigerio JM, Garnier-Géré P, Salin F, Cervera MT, Vornam B, Harvengt L, Plomion C.

PLoS One. 2010 Jun 9;5(6):e11034. doi: 10.1371/journal.pone.0011034.

PMID:
20543950
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum).

Russell JR, Bayer M, Booth C, Cardle L, Hackett CA, Hedley PE, Jorgensen L, Morris JA, Brennan RM.

BMC Plant Biol. 2011 Oct 28;11:147. doi: 10.1186/1471-2229-11-147.

PMID:
22035129
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Sequence-based genotyping for marker discovery and co-dominant scoring in germplasm and populations.

Truong HT, Ramos AM, Yalcin F, de Ruiter M, van der Poel HJ, Huvenaars KH, Hogers RC, van Enckevort LJ, Janssen A, van Orsouw NJ, van Eijk MJ.

PLoS One. 2012;7(5):e37565. doi: 10.1371/journal.pone.0037565. Epub 2012 May 25.

PMID:
22662172
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes.

Ashrafi H, Hill T, Stoffel K, Kozik A, Yao J, Chin-Wo SR, Van Deynze A.

BMC Genomics. 2012 Oct 30;13:571. doi: 10.1186/1471-2164-13-571.

PMID:
23110314
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology.

Lijavetzky D, Cabezas JA, Ibáñez A, Rodríguez V, Martínez-Zapater JM.

BMC Genomics. 2007 Nov 19;8:424.

PMID:
18021442
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine.

Chancerel E, Lepoittevin C, Le Provost G, Lin YC, Jaramillo-Correa JP, Eckert AJ, Wegrzyn JL, Zelenika D, Boland A, Frigerio JM, Chaumeil P, Garnier-Géré P, Boury C, Grivet D, González-Martínez SC, Rouzé P, Van de Peer Y, Neale DB, Cervera MT, Kremer A, Plomion C.

BMC Genomics. 2011 Jul 18;12:368. doi: 10.1186/1471-2164-12-368.

PMID:
21767361
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries.

Kumar S, You FM, Cloutier S.

BMC Genomics. 2012 Dec 6;13:684. doi: 10.1186/1471-2164-13-684.

PMID:
23216845
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome.

Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, Jones JD, Varshney RK.

Am J Bot. 2012 Feb;99(2):186-92. doi: 10.3732/ajb.1100419. Epub 2012 Feb 1.

PMID:
22301893
[PubMed - indexed for MEDLINE]
Free Article

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