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Results: 1 to 20 of 130

1.

A global "imaging'' view on systems approaches in immunology.

Ludewig B, Stein JV, Sharpe J, Cervantes-Barragan L, Thiel V, Bocharov G.

Eur J Immunol. 2012 Dec;42(12):3116-25. doi: 10.1002/eji.201242508. Review.

PMID:
23255008
[PubMed - indexed for MEDLINE]
2.

Unifying immunology with informatics and multiscale biology.

Kidd BA, Peters LA, Schadt EE, Dudley JT.

Nat Immunol. 2014 Feb;15(2):118-27. doi: 10.1038/ni.2787. Review.

PMID:
24448569
[PubMed - indexed for MEDLINE]
3.

Systems immunology: a survey of modeling formalisms, applications and simulation tools.

Narang V, Decraene J, Wong SY, Aiswarya BS, Wasem AR, Leong SR, Gouaillard A.

Immunol Res. 2012 Sep;53(1-3):251-65. doi: 10.1007/s12026-012-8305-7. Review.

PMID:
22528121
[PubMed - indexed for MEDLINE]
4.

The development of a fully-integrated immune response model (FIRM) simulator of the immune response through integration of multiple subset models.

Palsson S, Hickling TP, Bradshaw-Pierce EL, Zager M, Jooss K, O'Brien PJ, Spilker ME, Palsson BO, Vicini P.

BMC Syst Biol. 2013 Sep 28;7:95. doi: 10.1186/1752-0509-7-95.

PMID:
24074340
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Systems vaccinology: its promise and challenge for HIV vaccine development.

Nakaya HI, Pulendran B.

Curr Opin HIV AIDS. 2012 Jan;7(1):24-31. doi: 10.1097/COH.0b013e32834dc37b. Review.

PMID:
22156839
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Human systems immunology: hypothesis-based modeling and unbiased data-driven approaches.

Arazi A, Pendergraft WF 3rd, Ribeiro RM, Perelson AS, Hacohen N.

Semin Immunol. 2013 Oct 31;25(3):193-200. doi: 10.1016/j.smim.2012.11.003. Epub 2013 Jan 29. Review.

PMID:
23375135
[PubMed - indexed for MEDLINE]
7.

Systems biology in immunology: a computational modeling perspective.

Germain RN, Meier-Schellersheim M, Nita-Lazar A, Fraser ID.

Annu Rev Immunol. 2011;29:527-85. doi: 10.1146/annurev-immunol-030409-101317. Review.

PMID:
21219182
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Recent progress using systems biology approaches to better understand molecular mechanisms of immunity.

Gottschalk RA, Martins AJ, Sjoelund VH, Angermann BR, Lin B, Germain RN.

Semin Immunol. 2013 Oct 31;25(3):201-8. doi: 10.1016/j.smim.2012.11.002. Epub 2012 Dec 11. Review.

PMID:
23238271
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Immunoinformatics and systems biology methods for personalized medicine.

Yan Q.

Methods Mol Biol. 2010;662:203-20. doi: 10.1007/978-1-60761-800-3_10. Review.

PMID:
20824473
[PubMed - indexed for MEDLINE]
10.

A systems immunology approach to plasmacytoid dendritic cell function in cytopathic virus infections.

Bocharov G, Züst R, Cervantes-Barragan L, Luzyanina T, Chiglintsev E, Chereshnev VA, Thiel V, Ludewig B.

PLoS Pathog. 2010 Jul 22;6(7):e1001017. doi: 10.1371/journal.ppat.1001017.

PMID:
20661432
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Dynamic models of immune responses: what is the ideal level of detail?

Thakar J, Poss M, Albert R, Long GH, Zhang R.

Theor Biol Med Model. 2010 Aug 20;7:35. doi: 10.1186/1742-4682-7-35.

PMID:
20727155
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Translational systems biology of inflammation.

Vodovotz Y, Csete M, Bartels J, Chang S, An G.

PLoS Comput Biol. 2008 Apr 25;4(4):e1000014. doi: 10.1371/journal.pcbi.1000014. Review.

PMID:
18437239
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Green systems biology - From single genomes, proteomes and metabolomes to ecosystems research and biotechnology.

Weckwerth W.

J Proteomics. 2011 Dec 10;75(1):284-305. doi: 10.1016/j.jprot.2011.07.010. Epub 2011 Jul 23. Review.

PMID:
21802534
[PubMed - indexed for MEDLINE]
Free Article
14.

The evolution of mathematical immunology.

Louzoun Y.

Immunol Rev. 2007 Apr;216:9-20. Review.

PMID:
17367331
[PubMed - indexed for MEDLINE]
15.

BioLogic: A mathematical modeling framework for immunologists.

Ta'asan S, Gandlin R.

Methods Mol Biol. 2009;500:429-43. doi: 10.1007/978-1-59745-525-1_14.

PMID:
19399436
[PubMed - indexed for MEDLINE]
16.

Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008).

Aebersold R, Auffray C, Baney E, Barillot E, Brazma A, Brett C, Brunak S, Butte A, Califano A, Celis J, Cufer T, Ferrell J, Galas D, Gallahan D, Gatenby R, Goldbeter A, Hace N, Henney A, Hood L, Iyengar R, Jackson V, Kallioniemi O, Klingmüller U, Kolar P, Kolch W, Kyriakopoulou C, Laplace F, Lehrach H, Marcus F, Matrisian L, Nolan G, Pelkmans L, Potti A, Sander C, Seljak M, Singer D, Sorger P, Stunnenberg H, Superti-Furga G, Uhlen M, Vidal M, Weinstein J, Wigle D, Williams M, Wolkenhauer O, Zhivotovsky B, Zinovyev A, Zupan B.

Mol Oncol. 2009 Feb;3(1):9-17. doi: 10.1016/j.molonc.2008.11.003. Epub 2008 Dec 9.

PMID:
19383362
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Computational systems biology and dose-response modeling in relation to new directions in toxicity testing.

Zhang Q, Bhattacharya S, Andersen ME, Conolly RB.

J Toxicol Environ Health B Crit Rev. 2010 Feb;13(2-4):253-76. doi: 10.1080/10937404.2010.483943.

PMID:
20574901
[PubMed - indexed for MEDLINE]
18.

Hybrid semi-parametric mathematical systems: bridging the gap between systems biology and process engineering.

Teixeira AP, Carinhas N, Dias JM, Cruz P, Alves PM, Carrondo MJ, Oliveira R.

J Biotechnol. 2007 Dec 1;132(4):418-25. Epub 2007 Aug 15. Review.

PMID:
17870200
[PubMed - indexed for MEDLINE]
19.

Semi-automatic determination of cell surface areas used in systems biology.

Morath V, Keuper M, Rodriguez-Franco M, Deswal S, Fiala G, Blumenthal B, Kaschek D, Timmer J, Neuhaus G, Ehl S, Ronneberger O, Schamel WW.

Front Biosci (Elite Ed). 2013 Jan 1;5:533-45.

PMID:
23277009
[PubMed - indexed for MEDLINE]
20.

Insights into proteomic immune cell signaling and communication via data-driven modeling.

Benedict KF, Lauffenburger DA.

Curr Top Microbiol Immunol. 2013;363:201-33. doi: 10.1007/82_2012_249. Review.

PMID:
22878785
[PubMed - indexed for MEDLINE]

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