Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 151

1.

Bayesian selection of nucleotide substitution models and their site assignments.

Wu CH, Suchard MA, Drummond AJ.

Mol Biol Evol. 2013 Mar;30(3):669-88. doi: 10.1093/molbev/mss258. Epub 2012 Dec 11.

PMID:
23233462
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Bayesian coestimation of phylogeny and sequence alignment.

Lunter G, Miklós I, Drummond A, Jensen JL, Hein J.

BMC Bioinformatics. 2005 Apr 1;6:83.

PMID:
15804354
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Bayesian random local clocks, or one rate to rule them all.

Drummond AJ, Suchard MA.

BMC Biol. 2010 Aug 31;8:114. doi: 10.1186/1741-7007-8-114.

PMID:
20807414
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A reversible jump method for Bayesian phylogenetic inference with a nonhomogeneous substitution model.

Gowri-Shankar V, Rattray M.

Mol Biol Evol. 2007 Jun;24(6):1286-99. Epub 2007 Mar 7.

PMID:
17347157
[PubMed - indexed for MEDLINE]
Free Article
5.

Bayesian phylogenetic analysis of combined data.

Nylander JA, Ronquist F, Huelsenbeck JP, Nieves-Aldrey JL.

Syst Biol. 2004 Feb;53(1):47-67.

PMID:
14965900
[PubMed - indexed for MEDLINE]
6.

The devil in the details: interactions between the branch-length prior and likelihood model affect node support and branch lengths in the phylogeny of the Psoraceae.

Ekman S, Blaalid R.

Syst Biol. 2011 Jul;60(4):541-61. doi: 10.1093/sysbio/syr022. Epub 2011 Mar 24.

PMID:
21436107
[PubMed - indexed for MEDLINE]
7.

Model averaging and Bayes factor calculation of relaxed molecular clocks in Bayesian phylogenetics.

Li WL, Drummond AJ.

Mol Biol Evol. 2012 Feb;29(2):751-61. doi: 10.1093/molbev/msr232. Epub 2011 Sep 22.

PMID:
21940644
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Site-specific evolutionary rate inference: taking phylogenetic uncertainty into account.

Mayrose I, Mitchell A, Pupko T.

J Mol Evol. 2005 Mar;60(3):345-53.

PMID:
15871045
[PubMed - indexed for MEDLINE]
10.

A dirichlet process prior for estimating lineage-specific substitution rates.

Heath TA, Holder MT, Huelsenbeck JP.

Mol Biol Evol. 2012 Mar;29(3):939-55. doi: 10.1093/molbev/msr255. Epub 2011 Nov 2.

PMID:
22049064
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Joint Bayesian estimation of alignment and phylogeny.

Redelings BD, Suchard MA.

Syst Biol. 2005 Jun;54(3):401-18.

PMID:
16012107
[PubMed - indexed for MEDLINE]
12.

Probabilistic phylogenetic inference with insertions and deletions.

Rivas E, Eddy SR.

PLoS Comput Biol. 2008 Sep 19;4(9):e1000172. doi: 10.1371/journal.pcbi.1000172.

PMID:
18787703
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.

Huelsenbeck JP, Larget B, Alfaro ME.

Mol Biol Evol. 2004 Jun;21(6):1123-33. Epub 2004 Mar 19.

PMID:
15034130
[PubMed - indexed for MEDLINE]
Free Article
14.

Class of multiple sequence alignment algorithm affects genomic analysis.

Blackburne BP, Whelan S.

Mol Biol Evol. 2013 Mar;30(3):642-53. doi: 10.1093/molbev/mss256. Epub 2012 Nov 9.

PMID:
23144040
[PubMed - indexed for MEDLINE]
Free Article
15.

Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo.

Pagel M, Meade A.

Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27;363(1512):3955-64. doi: 10.1098/rstb.2008.0178.

PMID:
18852097
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Phylogenetic tree reconstruction accuracy and model fit when proportions of variable sites change across the tree.

Shavit Grievink L, Penny D, Hendy MD, Holland BR.

Syst Biol. 2010 May;59(3):288-97. doi: 10.1093/sysbio/syq003. Epub 2010 Mar 1.

PMID:
20525636
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A phylogenetic model for investigating correlated evolution of substitution rates and continuous phenotypic characters.

Lartillot N, Poujol R.

Mol Biol Evol. 2011 Jan;28(1):729-44. doi: 10.1093/molbev/msq244. Epub 2010 Oct 6.

PMID:
20926596
[PubMed - indexed for MEDLINE]
Free Article
18.

Uniformization for sampling realizations of Markov processes: applications to Bayesian implementations of codon substitution models.

Rodrigue N, Philippe H, Lartillot N.

Bioinformatics. 2008 Jan 1;24(1):56-62. Epub 2007 Nov 14.

PMID:
18003644
[PubMed - indexed for MEDLINE]
Free Article
19.

Data partitions and complex models in Bayesian analysis: the phylogeny of Gymnophthalmid lizards.

Castoe TA, Doan TM, Parkinson CL.

Syst Biol. 2004 Jun;53(3):448-69.

PMID:
15503673
[PubMed - indexed for MEDLINE]
20.

A Bayesian model comparison approach to inferring positive selection.

Scheffler K, Seoighe C.

Mol Biol Evol. 2005 Dec;22(12):2531-40. Epub 2005 Aug 24.

PMID:
16120799
[PubMed - indexed for MEDLINE]
Free Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk