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Results: 1 to 20 of 106

1.

Facing growth in the European Nucleotide Archive.

Cochrane G, Alako B, Amid C, Bower L, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Jang M, Kay S, Leinonen R, Lin X, Lopez R, McWilliam H, Oisel A, Pakseresht N, Pallreddy S, Park Y, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Ten Hoopen P, Toribio A, Vaughan D, Zalunin V.

Nucleic Acids Res. 2013 Jan;41(Database issue):D30-5. doi: 10.1093/nar/gks1175. Epub 2012 Nov 29.

PMID:
23203883
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Major submissions tool developments at the European Nucleotide Archive.

Amid C, Birney E, Bower L, Cerdeño-Tárraga A, Cheng Y, Cleland I, Faruque N, Gibson R, Goodgame N, Hunter C, Jang M, Leinonen R, Liu X, Oisel A, Pakseresht N, Plaister S, Radhakrishnan R, Reddy K, Rivière S, Rossello M, Senf A, Smirnov D, Ten Hoopen P, Vaughan D, Vaughan R, Zalunin V, Cochrane G.

Nucleic Acids Res. 2012 Jan;40(Database issue):D43-7. doi: 10.1093/nar/gkr946. Epub 2011 Nov 12.

PMID:
22080548
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Assembly information services in the European Nucleotide Archive.

Pakseresht N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Gur T, Jang M, Kay S, Leinonen R, Li W, Liu X, Lopez R, McWilliam H, Oisel A, Pallreddy S, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Squizzato S, ten Hoopen P, Toribio AL, Vaughan D, Zalunin V, Cochrane G.

Nucleic Acids Res. 2014 Jan;42(Database issue):D38-43. doi: 10.1093/nar/gkt1082. Epub 2013 Nov 8.

PMID:
24214989
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The European Nucleotide Archive.

Leinonen R, Akhtar R, Birney E, Bower L, Cerdeno-Tárraga A, Cheng Y, Cleland I, Faruque N, Goodgame N, Gibson R, Hoad G, Jang M, Pakseresht N, Plaister S, Radhakrishnan R, Reddy K, Sobhany S, Ten Hoopen P, Vaughan R, Zalunin V, Cochrane G.

Nucleic Acids Res. 2011 Jan;39(Database issue):D28-31. doi: 10.1093/nar/gkq967. Epub 2010 Oct 23.

PMID:
20972220
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The Sequence Read Archive: explosive growth of sequencing data.

Kodama Y, Shumway M, Leinonen R; International Nucleotide Sequence Database Collaboration.

Nucleic Acids Res. 2012 Jan;40(Database issue):D54-6. doi: 10.1093/nar/gkr854. Epub 2011 Oct 18.

PMID:
22009675
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The sequence read archive.

Leinonen R, Sugawara H, Shumway M; International Nucleotide Sequence Database Collaboration.

Nucleic Acids Res. 2011 Jan;39(Database issue):D19-21. doi: 10.1093/nar/gkq1019. Epub 2010 Nov 9.

PMID:
21062823
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Petabyte-scale innovations at the European Nucleotide Archive.

Cochrane G, Akhtar R, Bonfield J, Bower L, Demiralp F, Faruque N, Gibson R, Hoad G, Hubbard T, Hunter C, Jang M, Juhos S, Leinonen R, Leonard S, Lin Q, Lopez R, Lorenc D, McWilliam H, Mukherjee G, Plaister S, Radhakrishnan R, Robinson S, Sobhany S, Hoopen PT, Vaughan R, Zalunin V, Birney E.

Nucleic Acids Res. 2009 Jan;37(Database issue):D19-25. doi: 10.1093/nar/gkn765. Epub 2008 Oct 31.

PMID:
18978013
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Improvements to services at the European Nucleotide Archive.

Leinonen R, Akhtar R, Birney E, Bonfield J, Bower L, Corbett M, Cheng Y, Demiralp F, Faruque N, Goodgame N, Gibson R, Hoad G, Hunter C, Jang M, Leonard S, Lin Q, Lopez R, Maguire M, McWilliam H, Plaister S, Radhakrishnan R, Sobhany S, Slater G, Ten Hoopen P, Valentin F, Vaughan R, Zalunin V, Zerbino D, Cochrane G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D39-45. doi: 10.1093/nar/gkp998. Epub 2009 Nov 11.

PMID:
19906712
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

GenBank.

Benson DA, Karsch-Mizrachi I, Clark K, Lipman DJ, Ostell J, Sayers EW.

Nucleic Acids Res. 2012 Jan;40(Database issue):D48-53. doi: 10.1093/nar/gkr1202. Epub 2011 Dec 5.

PMID:
22144687
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.

Kodama Y, Mashima J, Kaminuma E, Gojobori T, Ogasawara O, Takagi T, Okubo K, Nakamura Y.

Nucleic Acids Res. 2012 Jan;40(Database issue):D38-42. doi: 10.1093/nar/gkr994. Epub 2011 Nov 22.

PMID:
22110025
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

DDBJ new system and service refactoring.

Ogasawara O, Mashima J, Kodama Y, Kaminuma E, Nakamura Y, Okubo K, Takagi T.

Nucleic Acids Res. 2013 Jan;41(Database issue):D25-9. doi: 10.1093/nar/gks1152. Epub 2012 Nov 24.

PMID:
23180790
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

GenBank.

Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.

Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42. doi: 10.1093/nar/gks1195. Epub 2012 Nov 27.

PMID:
23193287
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database.

Cochrane G, Akhtar R, Aldebert P, Althorpe N, Baldwin A, Bates K, Bhattacharyya S, Bonfield J, Bower L, Browne P, Castro M, Cox T, Demiralp F, Eberhardt R, Faruque N, Hoad G, Jang M, Kulikova T, Labarga A, Leinonen R, Leonard S, Lin Q, Lopez R, Lorenc D, McWilliam H, Mukherjee G, Nardone F, Plaister S, Robinson S, Sobhany S, Vaughan R, Wu D, Zhu W, Apweiler R, Hubbard T, Birney E.

Nucleic Acids Res. 2008 Jan;36(Database issue):D5-12. Epub 2007 Nov 26.

PMID:
18039715
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

EMBL Nucleotide Sequence Database: developments in 2005.

Cochrane G, Aldebert P, Althorpe N, Andersson M, Baker W, Baldwin A, Bates K, Bhattacharyya S, Browne P, van den Broek A, Castro M, Duggan K, Eberhardt R, Faruque N, Gamble J, Kanz C, Kulikova T, Lee C, Leinonen R, Lin Q, Lombard V, Lopez R, McHale M, McWilliam H, Mukherjee G, Nardone F, Pastor MP, Sobhany S, Stoehr P, Tzouvara K, Vaughan R, Wu D, Zhu W, Apweiler R.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D10-5.

PMID:
16381823
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The EMBL Nucleotide Sequence Database.

Kanz C, Aldebert P, Althorpe N, Baker W, Baldwin A, Bates K, Browne P, van den Broek A, Castro M, Cochrane G, Duggan K, Eberhardt R, Faruque N, Gamble J, Diez FG, Harte N, Kulikova T, Lin Q, Lombard V, Lopez R, Mancuso R, McHale M, Nardone F, Silventoinen V, Sobhany S, Stoehr P, Tuli MA, Tzouvara K, Vaughan R, Wu D, Zhu W, Apweiler R.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D29-33.

PMID:
15608199
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

EMBL Nucleotide Sequence Database in 2006.

Kulikova T, Akhtar R, Aldebert P, Althorpe N, Andersson M, Baldwin A, Bates K, Bhattacharyya S, Bower L, Browne P, Castro M, Cochrane G, Duggan K, Eberhardt R, Faruque N, Hoad G, Kanz C, Lee C, Leinonen R, Lin Q, Lombard V, Lopez R, Lorenc D, McWilliam H, Mukherjee G, Nardone F, Pastor MP, Plaister S, Sobhany S, Stoehr P, Vaughan R, Wu D, Zhu W, Apweiler R.

Nucleic Acids Res. 2007 Jan;35(Database issue):D16-20. Epub 2006 Dec 5.

PMID:
17148479
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Archiving next generation sequencing data.

Shumway M, Cochrane G, Sugawara H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D870-1. doi: 10.1093/nar/gkp1078. Epub 2009 Dec 3.

PMID:
19965774
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

DDBJ progress report: a new submission system for leading to a correct annotation.

Kosuge T, Mashima J, Kodama Y, Fujisawa T, Kaminuma E, Ogasawara O, Okubo K, Takagi T, Nakamura Y.

Nucleic Acids Res. 2014 Jan;42(Database issue):D44-9. doi: 10.1093/nar/gkt1066. Epub 2013 Nov 4.

PMID:
24194602
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

ArrayExpress update--trends in database growth and links to data analysis tools.

Rustici G, Kolesnikov N, Brandizi M, Burdett T, Dylag M, Emam I, Farne A, Hastings E, Ison J, Keays M, Kurbatova N, Malone J, Mani R, Mupo A, Pedro Pereira R, Pilicheva E, Rung J, Sharma A, Tang YA, Ternent T, Tikhonov A, Welter D, Williams E, Brazma A, Parkinson H, Sarkans U.

Nucleic Acids Res. 2013 Jan;41(Database issue):D987-90. doi: 10.1093/nar/gks1174. Epub 2012 Nov 27.

PMID:
23193272
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments.

Parkinson H, Sarkans U, Kolesnikov N, Abeygunawardena N, Burdett T, Dylag M, Emam I, Farne A, Hastings E, Holloway E, Kurbatova N, Lukk M, Malone J, Mani R, Pilicheva E, Rustici G, Sharma A, Williams E, Adamusiak T, Brandizi M, Sklyar N, Brazma A.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1002-4. doi: 10.1093/nar/gkq1040. Epub 2010 Nov 10.

PMID:
21071405
[PubMed - indexed for MEDLINE]
Free PMC Article

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