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Items: 1 to 20 of 103

1.
2.

Mapping PDB chains to UniProtKB entries.

Martin AC.

Bioinformatics. 2005 Dec 1;21(23):4297-301. Epub 2005 Sep 27.

3.

Intrinsic disorder in the Protein Data Bank.

Le Gall T, Romero PR, Cortese MS, Uversky VN, Dunker AK.

J Biomol Struct Dyn. 2007 Feb;24(4):325-42.

PMID:
17206849
4.

Analysis of sequence repeats of proteins in the PDB.

Mary Rajathei D, Selvaraj S.

Comput Biol Chem. 2013 Dec;47:156-66. doi: 10.1016/j.compbiolchem.2013.09.001. Epub 2013 Sep 20.

PMID:
24121644
5.

Statistical analysis of interface similarity in crystals of homologous proteins.

Xu Q, Canutescu AA, Wang G, Shapovalov M, Obradovic Z, Dunbrack RL Jr.

J Mol Biol. 2008 Aug 29;381(2):487-507. doi: 10.1016/j.jmb.2008.06.002. Epub 2008 Jun 7.

6.

Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology.

Ponomarenko JV, Bourne PE, Shindyalov IN.

Proteins. 2005 Mar 1;58(4):855-65.

PMID:
15645518
7.

A series of PDB-related databanks for everyday needs.

Touw WG, Baakman C, Black J, te Beek TA, Krieger E, Joosten RP, Vriend G.

Nucleic Acids Res. 2015 Jan;43(Database issue):D364-8. doi: 10.1093/nar/gku1028. Epub 2014 Oct 28.

8.
9.

PDB@: an offline toolkit for exploration and analysis of PDB files.

Mani U, Ravisankar S, Ramakrishnan SM.

J Struct Funct Genomics. 2013 Dec;14(4):127-33. doi: 10.1007/s10969-013-9162-x. Epub 2013 Aug 28.

PMID:
23982150
10.

MobiDB: a comprehensive database of intrinsic protein disorder annotations.

Di Domenico T, Walsh I, Martin AJ, Tosatto SC.

Bioinformatics. 2012 Aug 1;28(15):2080-1. doi: 10.1093/bioinformatics/bts327. Epub 2012 Jun 1.

11.

Crystal structure of TTHA0061, an uncharacterized protein from Thermus thermophilus HB8, reveals a novel fold.

Tanaka T, Niwa H, Yutani K, Kuramitsu S, Yokoyama S, Kumarevel T.

Biochem Biophys Res Commun. 2010 Sep 17;400(2):258-64. doi: 10.1016/j.bbrc.2010.08.054. Epub 2010 Aug 20.

PMID:
20728427
12.

Comprehensive large-scale assessment of intrinsic protein disorder.

Walsh I, Giollo M, Di Domenico T, Ferrari C, Zimmermann O, Tosatto SC.

Bioinformatics. 2015 Jan 15;31(2):201-8. doi: 10.1093/bioinformatics/btu625. Epub 2014 Sep 21.

13.

Het-PDB Navi.: a database for protein-small molecule interactions.

Yamaguchi A, Iida K, Matsui N, Tomoda S, Yura K, Go M.

J Biochem. 2004 Jan;135(1):79-84. Erratum in: J Biochem (Tokyo). 2004 May;135(5):651.

14.

SCOPEC: a database of protein catalytic domains.

George RA, Spriggs RV, Thornton JM, Al-Lazikani B, Swindells MB.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i130-6.

15.

Sequence-structure mapping errors in the PDB: OB-fold domains.

Venclovas C, Ginalski K, Kang C.

Protein Sci. 2004 Jun;13(6):1594-602. Epub 2004 May 7.

16.

sc-PDB: a database for identifying variations and multiplicity of 'druggable' binding sites in proteins.

Meslamani J, Rognan D, Kellenberger E.

Bioinformatics. 2011 May 1;27(9):1324-6. doi: 10.1093/bioinformatics/btr120. Epub 2011 Mar 12.

17.

Seq2Struct: a resource for establishing sequence-structure links.

Via A, Zanzoni A, Helmer-Citterich M.

Bioinformatics. 2005 Feb 15;21(4):551-3. Epub 2004 Sep 28.

18.
19.

BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions.

Yang J, Roy A, Zhang Y.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1096-103. doi: 10.1093/nar/gks966. Epub 2012 Oct 18.

20.

An approach to creating a more realistic working model from a protein data bank entry.

Brandon CJ, Martin BP, McGee KJ, Stewart JJ, Braun-Sand SB.

J Mol Model. 2015 Jan;21(1):2520. doi: 10.1007/s00894-014-2520-1. Epub 2015 Jan 22.

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