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Items: 1 to 20 of 116

1.

The RNA polymerase bridge helix YFI motif in catalysis, fidelity and translocation.

Nedialkov YA, Opron K, Assaf F, Artsimovitch I, Kireeva ML, Kashlev M, Cukier RI, Nudler E, Burton ZF.

Biochim Biophys Acta. 2013 Feb;1829(2):187-98. doi: 10.1016/j.bbagrm.2012.11.005. Epub 2012 Nov 30.

2.

Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase.

Seibold SA, Singh BN, Zhang C, Kireeva M, Domecq C, Bouchard A, Nazione AM, Feig M, Cukier RI, Coulombe B, Kashlev M, Hampsey M, Burton ZF.

Biochim Biophys Acta. 2010 Aug;1799(8):575-87. doi: 10.1016/j.bbagrm.2010.05.002. Epub 2010 May 15.

3.

Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase.

Kireeva ML, Opron K, Seibold SA, Domecq C, Cukier RI, Coulombe B, Kashlev M, Burton ZF.

BMC Biophys. 2012 Jun 7;5:11. doi: 10.1186/2046-1682-5-11.

5.

CBR antimicrobials alter coupling between the bridge helix and the β subunit in RNA polymerase.

Malinen AM, Nandymazumdar M, Turtola M, Malmi H, Grocholski T, Artsimovitch I, Belogurov GA.

Nat Commun. 2014 Mar 6;5:3408. doi: 10.1038/ncomms4408.

6.

The carboxy-terminal coiled-coil of the RNA polymerase beta'-subunit is the main binding site for Gre factors.

Vassylyeva MN, Svetlov V, Dearborn AD, Klyuyev S, Artsimovitch I, Vassylyev DG.

EMBO Rep. 2007 Nov;8(11):1038-43. Epub 2007 Oct 5.

9.
10.

Mutations in β' subunit of Escherichia coli RNA polymerase perturb the activator polymerase functional interaction required for promoter clearance.

Swapna G, Chakraborty A, Kumari V, Sen R, Nagaraja V.

Mol Microbiol. 2011 Jun;80(5):1169-85. doi: 10.1111/j.1365-2958.2011.07636.x. Epub 2011 Apr 5.

11.

Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins.

Toulokhonov I, Artsimovitch I, Landick R.

Science. 2001 Apr 27;292(5517):730-3.

12.

Transcription inhibition by the depsipeptide antibiotic salinamide A.

Degen D, Feng Y, Zhang Y, Ebright KY, Ebright YW, Gigliotti M, Vahedian-Movahed H, Mandal S, Talaue M, Connell N, Arnold E, Fenical W, Ebright RH.

Elife. 2014 Apr 30;3:e02451. doi: 10.7554/eLife.02451.

13.

Functional interplay between the jaw domain of bacterial RNA polymerase and allele-specific residues in the product RNA-binding pocket.

Ederth J, Mooney RA, Isaksson LA, Landick R.

J Mol Biol. 2006 Mar 10;356(5):1163-79. Epub 2005 Dec 13.

PMID:
16405998
14.
15.

Determinants of RNA polymerase alpha subunit for interaction with beta, beta', and sigma subunits: hydroxyl-radical protein footprinting.

Heyduk T, Heyduk E, Severinov K, Tang H, Ebright RH.

Proc Natl Acad Sci U S A. 1996 Sep 17;93(19):10162-6.

17.

Inter- and intrasubunit interactions during the formation of RNA polymerase assembly intermediate.

Naryshkina T, Rogulja D, Golub L, Severinov K.

J Biol Chem. 2000 Oct 6;275(40):31183-90.

18.

Mapping of catalytic residues in the RNA polymerase active center.

Zaychikov E, Martin E, Denissova L, Kozlov M, Markovtsov V, Kashlev M, Heumann H, Nikiforov V, Goldfarb A, Mustaev A.

Science. 1996 Jul 5;273(5271):107-9.

PMID:
8658176
20.

Activity map of the Escherichia coli RNA polymerase bridge helix.

Jovanovic M, Burrows PC, Bose D, Cámara B, Wiesler S, Zhang X, Wigneshweraraj S, Weinzierl RO, Buck M.

J Biol Chem. 2011 Apr 22;286(16):14469-79. doi: 10.1074/jbc.M110.212902. Epub 2011 Feb 25.

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