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Results: 1 to 20 of 85

1.

Large-scale neuroinformatics for in situ hybridization data in the mouse brain.

Ng LL, Sunkin SM, Feng D, Lau C, Dang C, Hawrylycz MJ.

Int Rev Neurobiol. 2012;104:159-82. doi: 10.1016/B978-0-12-398323-7.00007-0.

PMID:
23195315
[PubMed - indexed for MEDLINE]
2.

Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system.

Sunkin SM, Ng L, Lau C, Dolbeare T, Gilbert TL, Thompson CL, Hawrylycz M, Dang C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D996-D1008. doi: 10.1093/nar/gks1042. Epub 2012 Nov 28.

PMID:
23193282
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Neuroinformatics for genome-wide 3D gene expression mapping in the mouse brain.

Ng L, Pathak SD, Kuan C, Lau C, Dong H, Sodt A, Dang C, Avants B, Yushkevich P, Gee JC, Haynor D, Lein E, Jones A, Hawrylycz M.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jul-Sep;4(3):382-93.

PMID:
17666758
[PubMed - indexed for MEDLINE]
4.

Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain.

Lau C, Ng L, Thompson C, Pathak S, Kuan L, Jones A, Hawrylycz M.

BMC Bioinformatics. 2008 Mar 18;9:153. doi: 10.1186/1471-2105-9-153.

PMID:
18366675
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Study of gene function based on spatial co-expression in a high-resolution mouse brain atlas.

Liu Z, Yan SF, Walker JR, Zwingman TA, Jiang T, Li J, Zhou Y.

BMC Syst Biol. 2007 Apr 16;1:19.

PMID:
17437647
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Areal and laminar differentiation in the mouse neocortex using large scale gene expression data.

Hawrylycz M, Bernard A, Lau C, Sunkin SM, Chakravarty MM, Lein ES, Jones AR, Ng L.

Methods. 2010 Feb;50(2):113-21. doi: 10.1016/j.ymeth.2009.09.005. Epub 2009 Sep 30.

PMID:
19800006
[PubMed - indexed for MEDLINE]
7.

A digital atlas to characterize the mouse brain transcriptome.

Carson JP, Ju T, Lu HC, Thaller C, Xu M, Pallas SL, Crair MC, Warren J, Chiu W, Eichele G.

PLoS Comput Biol. 2005 Sep;1(4):e41. Epub 2005 Sep 23.

PMID:
16184189
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy.

Bohland JW, Bokil H, Pathak SD, Lee CK, Ng L, Lau C, Kuan C, Hawrylycz M, Mitra PP.

Methods. 2010 Feb;50(2):105-12. doi: 10.1016/j.ymeth.2009.09.001. Epub 2009 Sep 3.

PMID:
19733241
[PubMed - indexed for MEDLINE]
9.

Developmental mouse brain gene expression maps.

Brumwell CL, Curran T.

J Physiol. 2006 Sep 1;575(Pt 2):343-6. Epub 2006 May 25. Review.

PMID:
16728446
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Mouse brain organization revealed through direct genome-scale TF expression analysis.

Gray PA, Fu H, Luo P, Zhao Q, Yu J, Ferrari A, Tenzen T, Yuk DI, Tsung EF, Cai Z, Alberta JA, Cheng LP, Liu Y, Stenman JM, Valerius MT, Billings N, Kim HA, Greenberg ME, McMahon AP, Rowitch DH, Stiles CD, Ma Q.

Science. 2004 Dec 24;306(5705):2255-7.

PMID:
15618518
[PubMed - indexed for MEDLINE]
Free Article
11.

Surface-based mapping of gene expression and probabilistic expression maps in the mouse cortex.

Ng L, Lau C, Sunkin SM, Bernard A, Chakravarty MM, Lein ES, Jones AR, Hawrylycz M.

Methods. 2010 Feb;50(2):55-62. doi: 10.1016/j.ymeth.2009.10.001. Epub 2009 Oct 8.

PMID:
19818854
[PubMed - indexed for MEDLINE]
12.

Genome-wide atlas of gene expression in the adult mouse brain.

Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, Bernard A, Boe AF, Boguski MS, Brockway KS, Byrnes EJ, Chen L, Chen L, Chen TM, Chin MC, Chong J, Crook BE, Czaplinska A, Dang CN, Datta S, Dee NR, Desaki AL, Desta T, Diep E, Dolbeare TA, Donelan MJ, Dong HW, Dougherty JG, Duncan BJ, Ebbert AJ, Eichele G, Estin LK, Faber C, Facer BA, Fields R, Fischer SR, Fliss TP, Frensley C, Gates SN, Glattfelder KJ, Halverson KR, Hart MR, Hohmann JG, Howell MP, Jeung DP, Johnson RA, Karr PT, Kawal R, Kidney JM, Knapik RH, Kuan CL, Lake JH, Laramee AR, Larsen KD, Lau C, Lemon TA, Liang AJ, Liu Y, Luong LT, Michaels J, Morgan JJ, Morgan RJ, Mortrud MT, Mosqueda NF, Ng LL, Ng R, Orta GJ, Overly CC, Pak TH, Parry SE, Pathak SD, Pearson OC, Puchalski RB, Riley ZL, Rockett HR, Rowland SA, Royall JJ, Ruiz MJ, Sarno NR, Schaffnit K, Shapovalova NV, Sivisay T, Slaughterbeck CR, Smith SC, Smith KA, Smith BI, Sodt AJ, Stewart NN, Stumpf KR, Sunkin SM, Sutram M, Tam A, Teemer CD, Thaller C, Thompson CL, Varnam LR, Visel A, Whitlock RM, Wohnoutka PE, Wolkey CK, Wong VY, Wood M, Yaylaoglu MB, Young RC, Youngstrom BL, Yuan XF, Zhang B, Zwingman TA, Jones AR.

Nature. 2007 Jan 11;445(7124):168-76. Epub 2006 Dec 6.

PMID:
17151600
[PubMed - indexed for MEDLINE]
13.

Insights from spatially mapped gene expression in the mouse brain.

Sunkin SM, Hohmann JG.

Hum Mol Genet. 2007 Oct 15;16 Spec No. 2:R209-19. Review.

PMID:
17911164
[PubMed - indexed for MEDLINE]
Free Article
14.

An anatomic gene expression atlas of the adult mouse brain.

Ng L, Bernard A, Lau C, Overly CC, Dong HW, Kuan C, Pathak S, Sunkin SM, Dang C, Bohland JW, Bokil H, Mitra PP, Puelles L, Hohmann J, Anderson DJ, Lein ES, Jones AR, Hawrylycz M.

Nat Neurosci. 2009 Mar;12(3):356-62. doi: 10.1038/nn.2281. Epub 2009 Feb 15.

PMID:
19219037
[PubMed - indexed for MEDLINE]
15.

Automated pipeline for atlas-based annotation of gene expression patterns: application to postnatal day 7 mouse brain.

Carson J, Ju T, Bello M, Thaller C, Warren J, Kakadiaris IA, Chiu W, Eichele G.

Methods. 2010 Feb;50(2):85-95. doi: 10.1016/j.ymeth.2009.08.005. Epub 2009 Aug 19.

PMID:
19698790
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Analyzing in situ gene expression in the mouse brain with image registration, feature extraction and block clustering.

Jagalur M, Pal C, Learned-Miller E, Zoeller RT, Kulp D.

BMC Bioinformatics. 2007;8 Suppl 10:S5. doi: 10.1186/1471-2105-8-S10-S5.

PMID:
18269699
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

High-resolution gene expression atlases for adult and developing mouse brain and spinal cord.

Henry AM, Hohmann JG.

Mamm Genome. 2012 Oct;23(9-10):539-49. doi: 10.1007/s00335-012-9406-2. Epub 2012 Jul 26. Review.

PMID:
22832508
[PubMed - indexed for MEDLINE]
18.

E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains.

Martone ME, Gupta A, Ellisman MH.

Nat Neurosci. 2004 May;7(5):467-72.

PMID:
15114360
[PubMed - indexed for MEDLINE]
19.

Computational genetic neuroanatomy of the developing mouse brain: dimensionality reduction, visualization, and clustering.

Ji S.

BMC Bioinformatics. 2013 Jul 11;14:222. doi: 10.1186/1471-2105-14-222.

PMID:
23845024
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Development of high-throughput tools to unravel the complexity of gene expression patterns in the mammalian brain.

Herzig U, Cadenas C, Sieckmann F, Sierralta W, Thaller C, Visel A, Eichele G.

Novartis Found Symp. 2001;239:129-46; discussion 146-59. Review.

PMID:
11529308
[PubMed - indexed for MEDLINE]

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