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Results: 1 to 20 of 111

1.

EpicCapo: epitope prediction using combined information of amino acid pairwise contact potentials and HLA-peptide contact site information.

Saethang T, Hirose O, Kimkong I, Tran VA, Dang XT, Nguyen LA, Le TK, Kubo M, Yamada Y, Satou K.

BMC Bioinformatics. 2012 Nov 24;13:313. doi: 10.1186/1471-2105-13-313.

PMID:
23176036
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

PAAQD: Predicting immunogenicity of MHC class I binding peptides using amino acid pairwise contact potentials and quantum topological molecular similarity descriptors.

Saethang T, Hirose O, Kimkong I, Tran VA, Dang XT, Nguyen LA, Le TK, Kubo M, Yamada Y, Satou K.

J Immunol Methods. 2013 Jan 31;387(1-2):293-302. doi: 10.1016/j.jim.2012.09.016. Epub 2012 Oct 9.

PMID:
23058674
[PubMed - indexed for MEDLINE]
3.

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research.

Lin HH, Zhang GL, Tongchusak S, Reinherz EL, Brusic V.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S22. doi: 10.1186/1471-2105-9-S12-S22.

PMID:
19091022
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction.

Larsen MV, Lundegaard C, Lamberth K, Buus S, Lund O, Nielsen M.

BMC Bioinformatics. 2007 Oct 31;8:424.

PMID:
17973982
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Cross-protective peptide vaccine against influenza A viruses developed in HLA-A*2402 human immunity model.

Ichihashi T, Yoshida R, Sugimoto C, Takada A, Kajino K.

PLoS One. 2011;6(9):e24626. doi: 10.1371/journal.pone.0024626. Epub 2011 Sep 19.

PMID:
21949735
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A sequence pattern for peptides presented to cytotoxic T lymphocytes by HLA B8 revealed by analysis of epitopes and eluted peptides.

Sutton J, Rowland-Jones S, Rosenberg W, Nixon D, Gotch F, Gao XM, Murray N, Spoonas A, Driscoll P, Smith M, et al.

Eur J Immunol. 1993 Feb;23(2):447-53.

PMID:
7679646
[PubMed - indexed for MEDLINE]
7.

HLA B37 determines an influenza A virus nucleoprotein epitope recognized by cytotoxic T lymphocytes.

McMichael AJ, Gotch FM, Rothbard J.

J Exp Med. 1986 Nov 1;164(5):1397-406.

PMID:
2430041
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

TEPITOPEpan: extending TEPITOPE for peptide binding prediction covering over 700 HLA-DR molecules.

Zhang L, Chen Y, Wong HS, Zhou S, Mamitsuka H, Zhu S.

PLoS One. 2012;7(2):e30483. doi: 10.1371/journal.pone.0030483. Epub 2012 Feb 23.

PMID:
22383964
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Induction of cytotoxic T-cell responses by gene gun DNA vaccination with minigenes encoding influenza A virus HA and NP CTL-epitopes.

Fomsgaard A, Nielsen HV, Kirkby N, Bryder K, Corbet S, Nielsen C, Hinkula J, Buus S.

Vaccine. 1999 Nov 12;18(7-8):681-91.

PMID:
10547428
[PubMed - indexed for MEDLINE]
10.

Prediction of CTL epitopes using QM, SVM and ANN techniques.

Bhasin M, Raghava GP.

Vaccine. 2004 Aug 13;22(23-24):3195-204.

PMID:
15297074
[PubMed - indexed for MEDLINE]
11.

Toward the prediction of class I and II mouse major histocompatibility complex-peptide-binding affinity: in silico bioinformatic step-by-step guide using quantitative structure-activity relationships.

Hattotuwagama CK, Doytchinova IA, Flower DR.

Methods Mol Biol. 2007;409:227-45. doi: 10.1007/978-1-60327-118-9_16.

PMID:
18450004
[PubMed - indexed for MEDLINE]
12.

Conserved epitopes of influenza A virus inducing protective immunity and their prospects for universal vaccine development.

Staneková Z, Varečková E.

Virol J. 2010 Nov 30;7:351. doi: 10.1186/1743-422X-7-351. Review.

PMID:
21118546
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Analysis of a naturally occurring HLA class I-restricted viral epitope.

Falk K, Rötzschke O, Stevanović S, Gnau V, Sparbier K, Jung G, Rammensee HG, Walden P.

Immunology. 1994 Jul;82(3):337-42.

PMID:
7525458
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A human cytotoxic T-lymphocyte epitope and its agonist epitope from the nonvariable number of tandem repeat sequence of MUC-1.

Tsang KY, Palena C, Gulley J, Arlen P, Schlom J.

Clin Cancer Res. 2004 Mar 15;10(6):2139-49.

PMID:
15041735
[PubMed - indexed for MEDLINE]
Free Article
15.

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method.

Nielsen M, Lundegaard C, Lund O.

BMC Bioinformatics. 2007 Jul 4;8:238.

PMID:
17608956
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Evolutionarily conserved protein sequences of influenza a viruses, avian and human, as vaccine targets.

Heiny AT, Miotto O, Srinivasan KN, Khan AM, Zhang GL, Brusic V, Tan TW, August JT.

PLoS One. 2007 Nov 21;2(11):e1190.

PMID:
18030326
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Definition of a human T cell epitope from influenza A non-structural protein 1 using HLA-A2.1 transgenic mice.

Man S, Newberg MH, Crotzer VL, Luckey CJ, Williams NS, Chen Y, Huczko EL, Ridge JP, Engelhard VH.

Int Immunol. 1995 Apr;7(4):597-605.

PMID:
7547687
[PubMed - indexed for MEDLINE]
18.

A mutation in the HLA-B*2705-restricted NP383-391 epitope affects the human influenza A virus-specific cytotoxic T-lymphocyte response in vitro.

Berkhoff EG, Boon AC, Nieuwkoop NJ, Fouchier RA, Sintnicolaas K, Osterhaus AD, Rimmelzwaan GF.

J Virol. 2004 May;78(10):5216-22.

PMID:
15113903
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Towards prediction of degenerate CTL epitope recognition.

Li F, McKenney DM, Malhotra U, Crimi C, Nolin J, Corey L, McElrath JM, Newman MJ, Self SG.

Hum Vaccin. 2008 Mar-Apr;4(2):115-21. Epub 2007 Oct 26.

PMID:
18382130
[PubMed - indexed for MEDLINE]
Free Article
20.

Epitope scanning using virtual matrix-based algorithms.

Raddrizzani L, Hammer J.

Brief Bioinform. 2000 May;1(2):179-89.

PMID:
11465029
[PubMed - indexed for MEDLINE]
Free Article

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