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Results: 1 to 20 of 59

1.

Bioinformatics approaches and tools for metagenomic analysis. Editorial.

Valiente G, Pesole G.

Brief Bioinform. 2012 Nov;13(6):645. doi: 10.1093/bib/bbs079. No abstract available.

PMID:
23175747
[PubMed - indexed for MEDLINE]
2.

[A review on the bioinformatics pipelines for metagenomic research].

Ye DD, Fan MM, Guan Q, Chen HJ, Ma ZS.

Dongwuxue Yanjiu. 2012 Dec;33(6):574-85. doi: 10.3724/SP.J.1141.2012.06574. Review. Chinese.

PMID:
23266976
[PubMed - indexed for MEDLINE]
Free Article
3.

Identifying biologically relevant differences between metagenomic communities.

Parks DH, Beiko RG.

Bioinformatics. 2010 Mar 15;26(6):715-21. doi: 10.1093/bioinformatics/btq041. Epub 2010 Feb 3.

PMID:
20130030
[PubMed - indexed for MEDLINE]
Free Article
4.

From bacterial to microbial ecosystems (metagenomics).

Williamson SJ, Yooseph S.

Methods Mol Biol. 2012;804:35-55. doi: 10.1007/978-1-61779-361-5_3. Review.

PMID:
22144147
[PubMed - indexed for MEDLINE]
5.

Computational tools for viral metagenomics and their application in clinical research.

Fancello L, Raoult D, Desnues C.

Virology. 2012 Dec 20;434(2):162-74. doi: 10.1016/j.virol.2012.09.025. Epub 2012 Oct 11. Review.

PMID:
23062738
[PubMed - indexed for MEDLINE]
Free Article
6.

Bioinformatics for the Human Microbiome Project.

Gevers D, Pop M, Schloss PD, Huttenhower C.

PLoS Comput Biol. 2012;8(11):e1002779. doi: 10.1371/journal.pcbi.1002779. Epub 2012 Nov 29. No abstract available.

PMID:
23209389
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets.

Bengtsson J, Hartmann M, Unterseher M, Vaishampayan P, Abarenkov K, Durso L, Bik EM, Garey JR, Eriksson KM, Nilsson RH.

Res Microbiol. 2012 Jul;163(6-7):407-12. doi: 10.1016/j.resmic.2012.07.001. Epub 2012 Jul 21.

PMID:
22824070
[PubMed - indexed for MEDLINE]
8.

MetaRank: a rank conversion scheme for comparative analysis of microbial community compositions.

Wang TY, Su CH, Tsai HK.

Bioinformatics. 2011 Dec 15;27(24):3341-7. doi: 10.1093/bioinformatics/btr583. Epub 2011 Oct 20.

PMID:
22016405
[PubMed - indexed for MEDLINE]
Free Article
9.

From genomics to metagenomics.

Desai N, Antonopoulos D, Gilbert JA, Glass EM, Meyer F.

Curr Opin Biotechnol. 2012 Feb;23(1):72-6. doi: 10.1016/j.copbio.2011.12.017. Epub 2012 Jan 5. Review.

PMID:
22227326
[PubMed - indexed for MEDLINE]
10.

A novel bioinformatics strategy for searching industrially useful genome resources from metagenomic sequence libraries.

Uehara H, Iwasaki Y, Wada C, Ikemura T, Abe T.

Genes Genet Syst. 2011;86(1):53-66.

PMID:
21498923
[PubMed - indexed for MEDLINE]
Free Article
11.

Genomic standards consortium workshop: metagenomics, metadata and metaanalysis (M3).

Sterk P, Hirschman L, Field D, Wooley J.

Pac Symp Biocomput. 2010:481-4.

PMID:
19908400
[PubMed - indexed for MEDLINE]
Free Article
12.

Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes.

Tasse L, Bercovici J, Pizzut-Serin S, Robe P, Tap J, Klopp C, Cantarel BL, Coutinho PM, Henrissat B, Leclerc M, Doré J, Monsan P, Remaud-Simeon M, Potocki-Veronese G.

Genome Res. 2010 Nov;20(11):1605-12. doi: 10.1101/gr.108332.110. Epub 2010 Sep 14.

PMID:
20841432
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Virtual metagenome reconstruction from 16S rRNA gene sequences.

Okuda S, Tsuchiya Y, Kiriyama C, Itoh M, Morisaki H.

Nat Commun. 2012;3:1203. doi: 10.1038/ncomms2203.

PMID:
23149747
[PubMed - indexed for MEDLINE]
14.

Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage.

Anderson RE, Brazelton WJ, Baross JA.

FEMS Microbiol Ecol. 2011 Jul;77(1):120-33. doi: 10.1111/j.1574-6941.2011.01090.x. Epub 2011 Apr 11.

PMID:
21410492
[PubMed - indexed for MEDLINE]
15.

Short prokaryotic DNA fragment binning using a hierarchical classifier based on linear discriminant analysis and principal component analysis.

Zheng H, Wu H.

J Bioinform Comput Biol. 2010 Dec;8(6):995-1011.

PMID:
21121023
[PubMed - indexed for MEDLINE]
16.

Metagenomic signatures of 86 microbial and viral metagenomes.

Willner D, Thurber RV, Rohwer F.

Environ Microbiol. 2009 Jul;11(7):1752-66. doi: 10.1111/j.1462-2920.2009.01901.x. Epub 2009 Mar 18.

PMID:
19302541
[PubMed - indexed for MEDLINE]
17.

Get the most out of your metagenome: computational analysis of environmental sequence data.

Raes J, Foerstner KU, Bork P.

Curr Opin Microbiol. 2007 Oct;10(5):490-8. Epub 2007 Oct 23. Review.

PMID:
17936679
[PubMed - indexed for MEDLINE]
18.

Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities.

Suenaga H.

Environ Microbiol. 2012 Jan;14(1):13-22. doi: 10.1111/j.1462-2920.2011.02438.x. Epub 2011 Mar 1. Review.

PMID:
21366818
[PubMed - indexed for MEDLINE]
19.

Novel tools for the functional expression of metagenomic DNA.

Troeschel SC, Drepper T, Leggewie C, Streit WR, Jaeger KE.

Methods Mol Biol. 2010;668:117-39. doi: 10.1007/978-1-60761-823-2_8.

PMID:
20830560
[PubMed - indexed for MEDLINE]
20.

Wide host-range cloning for functional metagenomics.

Wexler M, Johnston AW.

Methods Mol Biol. 2010;668:77-96. doi: 10.1007/978-1-60761-823-2_5.

PMID:
20830557
[PubMed - indexed for MEDLINE]

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