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Homoeolog expression bias and expression level dominance in allopolyploid cotton.

Yoo MJ, Szadkowski E, Wendel JF.

Heredity (Edinb). 2013 Feb;110(2):171-80. doi: 10.1038/hdy.2012.94. Epub 2012 Nov 21.


Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution.

Flagel L, Udall J, Nettleton D, Wendel J.

BMC Biol. 2008 Apr 16;6:16. doi: 10.1186/1741-7007-6-16.


Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation.

Flagel LE, Wendel JF.

New Phytol. 2010 Apr;186(1):184-93. doi: 10.1111/j.1469-8137.2009.03107.x. Epub 2009 Nov 19.


Genomic expression dominance in allopolyploids.

Rapp RA, Udall JA, Wendel JF.

BMC Biol. 2009 May 1;7:18. doi: 10.1186/1741-7007-7-18.


The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco.

Gong L, Salmon A, Yoo MJ, Grupp KK, Wang Z, Paterson AH, Wendel JF.

Mol Biol Evol. 2012 Oct;29(10):3023-36. Epub 2012 Apr 3.


Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium).

Chaudhary B, Flagel L, Stupar RM, Udall JA, Verma N, Springer NM, Wendel JF.

Genetics. 2009 Jun;182(2):503-17. doi: 10.1534/genetics.109.102608. Epub 2009 Apr 10.


Polyploidy and the petal transcriptome of Gossypium.

Rambani A, Page JT, Udall JA.

BMC Plant Biol. 2014 Jan 6;14:3. doi: 10.1186/1471-2229-14-3.


Homoeolog-specific transcriptional bias in allopolyploid wheat.

Akhunova AR, Matniyazov RT, Liang H, Akhunov ED.

BMC Genomics. 2010 Sep 17;11:505. doi: 10.1186/1471-2164-11-505.


Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing.

Adams KL, Cronn R, Percifield R, Wendel JF.

Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4649-54. Epub 2003 Mar 28.


Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense.

Hu G, Koh J, Yoo MJ, Grupp K, Chen S, Wendel JF.

New Phytol. 2013 Oct;200(2):570-82. doi: 10.1111/nph.12381. Epub 2013 Jun 25.


Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton.

Flagel LE, Wendel JF, Udall JA.

BMC Genomics. 2012 Jul 6;13:302. doi: 10.1186/1471-2164-13-302.


Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant.

Hovav R, Udall JA, Chaudhary B, Rapp R, Flagel L, Wendel JF.

Proc Natl Acad Sci U S A. 2008 Apr 22;105(16):6191-5. doi: 10.1073/pnas.0711569105. Epub 2008 Apr 17.


Genomically biased accumulation of seed storage proteins in allopolyploid cotton.

Hu G, Houston NL, Pathak D, Schmidt L, Thelen JJ, Wendel JF.

Genetics. 2011 Nov;189(3):1103-15. doi: 10.1534/genetics.111.132407. Epub 2011 Sep 6.


Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus.

Buggs RJ, Elliott NM, Zhang L, Koh J, Viccini LF, Soltis DE, Soltis PS.

New Phytol. 2010 Apr;186(1):175-83. doi: 10.1111/j.1469-8137.2010.03205.x.


Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium).

Chaudhary B, Hovav R, Flagel L, Mittler R, Wendel JF.

BMC Genomics. 2009 Aug 17;10:378. doi: 10.1186/1471-2164-10-378.


Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton.

Flagel LE, Chen L, Chaudhary B, Wendel JF.

J Hered. 2009 Jul-Aug;100(4):487-90. doi: 10.1093/jhered/esp003. Epub 2009 Mar 5.


Transcriptomic changes following recent natural hybridization and allopolyploidy in the salt marsh species Spartina x townsendii and Spartina anglica (Poaceae).

Chelaifa H, Monnier A, Ainouche M.

New Phytol. 2010 Apr;186(1):161-74. doi: 10.1111/j.1469-8137.2010.03179.x. Epub 2010 Feb 8.


On the road to diploidization? Homoeolog loss in independently formed populations of the allopolyploid Tragopogon miscellus (Asteraceae).

Tate JA, Joshi P, Soltis KA, Soltis PS, Soltis DE.

BMC Plant Biol. 2009 Jun 27;9:80. doi: 10.1186/1471-2229-9-80.


Parental squabbles and genome expression: lessons from the polyploids.

Pignatta D, Comai L.

J Biol. 2009;8(4):43. doi: 10.1186/jbiol140. Epub 2009 May 1. Review.


An interspecific fungal hybrid reveals cross-kingdom rules for allopolyploid gene expression patterns.

Cox MP, Dong T, Shen G, Dalvi Y, Scott DB, Ganley AR.

PLoS Genet. 2014 Mar 6;10(3):e1004180. doi: 10.1371/journal.pgen.1004180. eCollection 2014 Mar.

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