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Items: 1 to 20 of 179

1.

Highly ordered pyrene π-stacks on an RNA duplex display static excimer fluorescence.

Nakamura M, Fukuda M, Takada T, Yamana K.

Org Biomol Chem. 2012 Dec 28;10(48):9620-6. doi: 10.1039/c2ob26773j. Epub 2012 Nov 7.

PMID:
23135255
2.

Efficient quenching of the excimer fluorescence derived from pyrene arrays on RNA duplexes.

Maie K, Nakamura M, Yamana K.

Nucleic Acids Symp Ser (Oxf). 2008;(52):705-6. doi: 10.1093/nass/nrn356.

3.

Pyrene is highly emissive when attached to the RNA duplex but not to the DNA duplex: the structural basis of this difference.

Nakamura M, Fukunaga Y, Sasa K, Ohtoshi Y, Kanaori K, Hayashi H, Nakano H, Yamana K.

Nucleic Acids Res. 2005 Oct 19;33(18):5887-95. Print 2005.

4.

Pyrene aromatic arrays on RNA duplexes as helical templates.

Nakamura M, Shimomura Y, Ohtoshi Y, Sasa K, Hayashi H, Nakano H, Yamana K.

Org Biomol Chem. 2007 Jun 21;5(12):1945-51. Epub 2007 May 18.

PMID:
17551644
5.

Structure and excimer fluorescence of helical-pyrene-arrays assembled on duplex RNA.

Nakamura M, Yamana K, Simomura Y, Ohtoshi Y.

Nucleic Acids Symp Ser (Oxf). 2007;(51):275-6.

6.

Pyrene-zipper array assembled via RNA duplex formation.

Nakamura M, Murakami Y, Sasa K, Hayashi H, Yamana K.

J Am Chem Soc. 2008 Jun 4;130(22):6904-5. doi: 10.1021/ja801054t. Epub 2008 May 13.

PMID:
18473465
7.

Zipper-like assembly of multi-pyrenes covalently attached to RNA sequences via duplex formation.

Nakamura M, Murakami Y, Yamana K.

Nucleic Acids Symp Ser (Oxf). 2008;(52):707-8. doi: 10.1093/nass/nrn357.

8.

Alignment of pyrene aromatics along RNA double helix.

Ohtoshi Y, Nakamura M, Yamana K.

Nucleic Acids Symp Ser (Oxf). 2005;(49):141-2.

9.

Detection of RNA hybridization by pyrene-labeled probes.

Wang G, Bobkov GV, Mikhailov SN, Schepers G, Van Aerschot A, Rozenski J, Van der Auweraer M, Herdewijn P, De Feyter S.

Chembiochem. 2009 May 4;10(7):1175-85. doi: 10.1002/cbic.200900031.

PMID:
19373795
10.

Ultrafast dynamics of 1-ethynylpyrene-modified RNA: a photophysical probe of intercalation.

Förster U, Grünewald C, Engels JW, Wachtveitl J.

J Phys Chem B. 2010 Sep 9;114(35):11638-45. doi: 10.1021/jp103176q.

PMID:
20707369
11.

Characterization of RNA structure by bis-pyrene-labeled 2'-O-methyloligonucleotides.

Mahara A, Iwase R, Yamana K, Yamaoka T, Murakami A.

Nucleic Acids Symp Ser. 2000;(44):199-200.

12.

Nucleic acid hybridization accompanied with excimer formation from two pyrene-labeled probes.

Ebata K, Masuko M, Ohtani H, Kashiwasake-Jibu M.

Photochem Photobiol. 1995 Nov;62(5):836-9.

PMID:
8570721
13.

Fluorescence quenching properties of multiple pyrene-modified RNAs.

Maie K, Nakamura M, Takada T, Yamana K.

Bioorg Med Chem. 2009 Jul 15;17(14):4996-5000. doi: 10.1016/j.bmc.2009.05.074. Epub 2009 Jun 6.

PMID:
19527936
14.

Bis-pyrene-labeled oligonucleotides: sequence specificity of excimer and monomer fluorescence changes upon hybridization with DNA.

Yamana K, Iwai T, Ohtani Y, Sato S, Nakamura M, Nakano H.

Bioconjug Chem. 2002 Nov-Dec;13(6):1266-73.

PMID:
12440862
15.

Multilabeled pyrene-functionalized 2'-amino-LNA probes for nucleic acid detection in homogeneous fluorescence assays.

Hrdlicka PJ, Babu BR, Sørensen MD, Harrit N, Wengel J.

J Am Chem Soc. 2005 Sep 28;127(38):13293-9.

PMID:
16173760
16.

Excimer formation by hybridization using two pyrene-labeled oligonucleotide probes.

Ebata K, Masuko M, Ohtani H, Jibu M.

Nucleic Acids Symp Ser. 1995;(34):187-8.

PMID:
8841615
17.

Helical pyrene-array along the outside of duplex RNA.

Nakamura M, Ohtoshi Y, Yamana K.

Chem Commun (Camb). 2005 Nov 7;(41):5163-5. Epub 2005 Sep 22.

PMID:
16228022
18.

Duplex formation of multiple pyrene-modified RNAs.

Fukuda M, Nakamura M, Takada T, Yamana K.

Nucleic Acids Symp Ser (Oxf). 2009;(53):133-4. doi: 10.1093/nass/nrp067.

19.

Three pyrene-modified nucleotides: synthesis and effects in secondary nucleic acid structures.

Kumar P, Shaikh KI, Jørgensen AS, Kumar S, Nielsen P.

J Org Chem. 2012 Nov 2;77(21):9562-73. doi: 10.1021/jo301571s. Epub 2012 Oct 23.

PMID:
23039223
20.

7-Deazapurine and 8-aza-7-deazapurine nucleoside and oligonucleotide pyrene "click" conjugates: synthesis, nucleobase controlled fluorescence quenching, and duplex stability.

Ingale SA, Pujari SS, Sirivolu VR, Ding P, Xiong H, Mei H, Seela F.

J Org Chem. 2012 Jan 6;77(1):188-99. doi: 10.1021/jo202103q. Epub 2011 Dec 14.

PMID:
22129276
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