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Items: 1 to 20 of 94

1.

Practical capability and cost effectiveness of a DNA pool-based genome-wide association study using BovineSNP50 array in a cattle population.

Uemoto Y, Sasago N, Abe T, Okada H, Maruoka H, Nakajima H, Shoji N, Maruyama S, Kobayashi N, Mannen H, Kobayashi E.

Anim Sci J. 2012 Nov;83(11):719-26. doi: 10.1111/j.1740-0929.2012.01022.x. Epub 2012 May 3.

PMID:
23126324
2.

Estimates of array and pool-construction variance for planning efficient DNA-pooling genome wide association studies.

Earp MA, Rahmani M, Chew K, Brooks-Wilson A.

BMC Med Genomics. 2011 Nov 28;4:81. doi: 10.1186/1755-8794-4-81.

3.

Comparison of genotyping using pooled DNA samples (allelotyping) and individual genotyping using the affymetrix genome-wide human SNP array 6.0.

Teumer A, Ernst FD, Wiechert A, Uhr K, Nauck M, Petersmann A, Völzke H, Völker U, Homuth G.

BMC Genomics. 2013 Jul 26;14:506. doi: 10.1186/1471-2164-14-506.

4.

A genome-wide association study using selective DNA pooling identifies candidate markers for fertility in Holstein cattle.

Huang W, Kirkpatrick BW, Rosa GJ, Khatib H.

Anim Genet. 2010 Dec;41(6):570-8. doi: 10.1111/j.1365-2052.2010.02046.x.

PMID:
20394602
5.
6.

Cost-effective genome-wide estimation of allele frequencies from pooled DNA in Atlantic salmon (Salmo salar L.).

Ozerov M, Vasemägi A, Wennevik V, Niemelä E, Prusov S, Kent M, Vähä JP.

BMC Genomics. 2013 Jan 16;14:12. doi: 10.1186/1471-2164-14-12.

7.

Highly cost-efficient genome-wide association studies using DNA pools and dense SNP arrays.

Macgregor S, Zhao ZZ, Henders A, Nicholas MG, Montgomery GW, Visscher PM.

Nucleic Acids Res. 2008 Apr;36(6):e35. doi: 10.1093/nar/gkm1060. Epub 2008 Feb 14.

8.

The efficacy of detecting variants with small effects on the Affymetrix 6.0 platform using pooled DNA.

Chiang CW, Gajdos ZK, Korn JM, Butler JL, Hackett R, Guiducci C, Nguyen TT, Wilks R, Forrester T, Henderson KD, Le Marchand L, Henderson BE, Haiman CA, Cooper RS, Lyon HN, Zhu X, McKenzie CA, Palmert MR, Hirschhorn JN.

Hum Genet. 2011 Nov;130(5):607-21. doi: 10.1007/s00439-011-0974-0. Epub 2011 Mar 22.

9.

Impact and quantification of the sources of error in DNA pooling designs.

Jawaid A, Sham P.

Ann Hum Genet. 2009 Jan;73(1):118-24. doi: 10.1111/j.1469-1809.2008.00486.x. Epub 2008 Oct 15.

10.

The SNPMaP package for R: a framework for genome-wide association using DNA pooling on microarrays.

Davis OS, Plomin R, Schalkwyk LC.

Bioinformatics. 2009 Jan 15;25(2):281-3. doi: 10.1093/bioinformatics/btn587. Epub 2008 Nov 12.

11.

On the use of DNA pooling to estimate haplotype frequencies.

Wang S, Kidd KK, Zhao H.

Genet Epidemiol. 2003 Jan;24(1):74-82.

PMID:
12508258
12.

Predicting breed composition using breed frequencies of 50,000 markers from the US Meat Animal Research Center 2,000 Bull Project.

Kuehn LA, Keele JW, Bennett GL, McDaneld TG, Smith TP, Snelling WM, Sonstegard TS, Thallman RM.

J Anim Sci. 2011 Jun;89(6):1742-50. doi: 10.2527/jas.2010-3530. Epub 2011 Jan 28.

13.

A genome-wide association study in 574 schizophrenia trios using DNA pooling.

Kirov G, Zaharieva I, Georgieva L, Moskvina V, Nikolov I, Cichon S, Hillmer A, Toncheva D, Owen MJ, O'Donovan MC.

Mol Psychiatry. 2009 Aug;14(8):796-803. doi: 10.1038/mp.2008.33. Epub 2008 Mar 11.

PMID:
18332876
14.

Investigation of transferability of BovineSNP50 BeadChip from cattle to water buffalo for genome wide association study.

Wu JJ, Song LJ, Wu FJ, Liang XW, Yang BZ, Wathes DC, Pollott GE, Cheng Z, Shi de S, Liu QY, Yang LG, Zhang SJ.

Mol Biol Rep. 2013 Feb;40(2):743-50. doi: 10.1007/s11033-012-1932-1. Epub 2012 Dec 12.

PMID:
23232712
15.

Genome-wide association study with DNA pooling identifies variants at CNTNAP2 associated with pseudoexfoliation syndrome.

Krumbiegel M, Pasutto F, Schlötzer-Schrehardt U, Uebe S, Zenkel M, Mardin CY, Weisschuh N, Paoli D, Gramer E, Becker C, Ekici AB, Weber BH, Nürnberg P, Kruse FE, Reis A.

Eur J Hum Genet. 2011 Feb;19(2):186-93. doi: 10.1038/ejhg.2010.144. Epub 2010 Sep 1.

16.

Optimal DNA pooling-based two-stage designs in case-control association studies.

Zhao Y, Wang S.

Hum Hered. 2009;67(1):46-56. doi: 10.1159/000164398. Epub 2008 Oct 17.

17.

Identification of susceptibility genes for complex diseases using pooling-based genome-wide association scans.

Bossé Y, Bacot F, Montpetit A, Rung J, Qu HQ, Engert JC, Polychronakos C, Hudson TJ, Froguel P, Sladek R, Desrosiers M.

Hum Genet. 2009 Apr;125(3):305-18. doi: 10.1007/s00439-009-0626-9. Epub 2009 Jan 29.

PMID:
19184112
18.

Fractioned DNA pooling: a new cost-effective strategy for fine mapping of quantitative trait loci.

Korol A, Frenkel Z, Cohen L, Lipkin E, Soller M.

Genetics. 2007 Aug;176(4):2611-23. Epub 2007 Jul 1. Erratum in: Genetics. 2008 Mar;178(3):1837.

19.
20.

Design considerations for genetic linkage and association studies.

Nsengimana J, Bishop DT.

Methods Mol Biol. 2012;850:237-62. doi: 10.1007/978-1-61779-555-8_13.

PMID:
22307702
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