Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 84

1.

PyroTrimmer: a software with GUI for pre-processing 454 amplicon sequences.

Oh J, Kim BK, Cho WS, Hong SG, Kim KM.

J Microbiol. 2012 Oct;50(5):766-9. doi: 10.1007/s12275-012-2494-6. Epub 2012 Nov 4.

PMID:
23124743
[PubMed - indexed for MEDLINE]
2.

CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies.

Pandey RV, Nolte V, Schlötterer C.

BMC Res Notes. 2010 Jan 11;3:3. doi: 10.1186/1756-0500-3-3.

PMID:
20180949
[PubMed]
Free PMC Article
3.

Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies.

Kong Y.

Genomics. 2011 Aug;98(2):152-3. doi: 10.1016/j.ygeno.2011.05.009. Epub 2011 May 30.

PMID:
21651976
[PubMed - indexed for MEDLINE]
Free Article
4.

MAGIC-SPP: a database-driven DNA sequence processing package with associated management tools.

Liang C, Sun F, Wang H, Qu J, Freeman RM Jr, Pratt LH, Cordonnier-Pratt MM.

BMC Bioinformatics. 2006 Mar 7;7:115.

PMID:
16522212
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

BIGpre: a quality assessment package for next-generation sequencing data.

Zhang T, Luo Y, Liu K, Pan L, Zhang B, Yu J, Hu S.

Genomics Proteomics Bioinformatics. 2011 Dec;9(6):238-44. doi: 10.1016/S1672-0229(11)60027-2.

PMID:
22289480
[PubMed - indexed for MEDLINE]
Free Article
6.

CLOTU: an online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation.

Kumar S, Carlsen T, Mevik BH, Enger P, Blaalid R, Shalchian-Tabrizi K, Kauserud H.

BMC Bioinformatics. 2011 May 20;12:182. doi: 10.1186/1471-2105-12-182.

PMID:
21599929
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

CANGS DB: a stand-alone web-based database tool for processing, managing and analyzing 454 data in biodiversity studies.

Pandey RV, Nolte V, Boenigk J, Schlötterer C.

BMC Res Notes. 2011 Jun 30;4:227. doi: 10.1186/1756-0500-4-227.

PMID:
21718534
[PubMed]
Free PMC Article
8.

QTrim: a novel tool for the quality trimming of sequence reads generated using the Roche/454 sequencing platform.

Shrestha RK, Lubinsky B, Bansode VB, Moinz MB, McCormack GP, Travers SA.

BMC Bioinformatics. 2014 Jan 30;15:33. doi: 10.1186/1471-2105-15-33.

PMID:
24479419
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read.

Falgueras J, Lara AJ, Fernández-Pozo N, Cantón FR, Pérez-Trabado G, Claros MG.

BMC Bioinformatics. 2010 Jan 20;11:38. doi: 10.1186/1471-2105-11-38.

PMID:
20089148
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

AdapterRemoval: easy cleaning of next-generation sequencing reads.

Lindgreen S.

BMC Res Notes. 2012 Jul 2;5:337. doi: 10.1186/1756-0500-5-337.

PMID:
22748135
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

ESTclean: a cleaning tool for next-gen transcriptome shotgun sequencing.

Tae H, Ryu D, Sureshchandra S, Choi JH.

BMC Bioinformatics. 2012 Sep 26;13:247. doi: 10.1186/1471-2105-13-247.

PMID:
23009593
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.

Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, Ruangrit U, Agavatpanitch G, Tongsima S.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S4. doi: 10.1186/1471-2164-10-S3-S4.

PMID:
19958502
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

BatchPrimer3: a high throughput web application for PCR and sequencing primer design.

You FM, Huo N, Gu YQ, Luo MC, Ma Y, Hane D, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2008 May 29;9:253. doi: 10.1186/1471-2105-9-253.

PMID:
18510760
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

StreamingTrim 1.0: a Java software for dynamic trimming of 16S rRNA sequence data from metagenetic studies.

Bacci G, Bazzicalupo M, Benedetti A, Mengoni A.

Mol Ecol Resour. 2014 Mar;14(2):426-34. doi: 10.1111/1755-0998.12187. Epub 2013 Nov 16.

PMID:
24128146
[PubMed - in process]
15.

SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing.

Meglécz E, Piry S, Desmarais E, Galan M, Gilles A, Guivier E, Pech N, Martin JF.

Bioinformatics. 2011 Jan 15;27(2):277-8. doi: 10.1093/bioinformatics/btq641. Epub 2010 Nov 16.

PMID:
21084284
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads.

Criscuolo A, Brisse S.

Genomics. 2013 Nov-Dec;102(5-6):500-6. doi: 10.1016/j.ygeno.2013.07.011. Epub 2013 Aug 1.

PMID:
23912058
[PubMed - indexed for MEDLINE]
17.

SNVerGUI: a desktop tool for variant analysis of next-generation sequencing data.

Wang W, Hu W, Hou F, Hu P, Wei Z.

J Med Genet. 2012 Dec;49(12):753-5. doi: 10.1136/jmedgenet-2012-101001. Epub 2012 Sep 28.

PMID:
23024288
[PubMed - indexed for MEDLINE]
18.

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets.

Schmieder R, Lim YW, Rohwer F, Edwards R.

BMC Bioinformatics. 2010 Jun 23;11:341. doi: 10.1186/1471-2105-11-341.

PMID:
20573248
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

XplorSeq: a software environment for integrated management and phylogenetic analysis of metagenomic sequence data.

Frank DN.

BMC Bioinformatics. 2008 Oct 7;9:420. doi: 10.1186/1471-2105-9-420.

PMID:
18840282
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool.

Jérôme M, Noirot C, Klopp C.

BMC Res Notes. 2011 May 26;4:149. doi: 10.1186/1756-0500-4-149.

PMID:
21615897
[PubMed]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk