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Results: 1 to 20 of 105

1.

Capturing native long-range contiguity by in situ library construction and optical sequencing.

Schwartz JJ, Lee C, Hiatt JB, Adey A, Shendure J.

Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18749-54. doi: 10.1073/pnas.1202680109. Epub 2012 Oct 29.

PMID:
23112150
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Paired-end sequencing of Fosmid libraries by Illumina.

Williams LJ, Tabbaa DG, Li N, Berlin AM, Shea TP, Maccallum I, Lawrence MS, Drier Y, Getz G, Young SK, Jaffe DB, Nusbaum C, Gnirke A.

Genome Res. 2012 Nov;22(11):2241-9. doi: 10.1101/gr.138925.112. Epub 2012 Jul 16.

PMID:
22800726
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Local de novo assembly of RAD paired-end contigs using short sequencing reads.

Etter PD, Preston JL, Bassham S, Cresko WA, Johnson EA.

PLoS One. 2011 Apr 13;6(4):e18561. doi: 10.1371/journal.pone.0018561.

PMID:
21541009
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Paired-end sequencing of long-range DNA fragments for de novo assembly of large, complex Mammalian genomes by direct intra-molecule ligation.

Asan, Geng C, Chen Y, Wu K, Cai Q, Wang Y, Lang Y, Cao H, Yang H, Wang J, Zhang X.

PLoS One. 2012;7(9):e46211. doi: 10.1371/journal.pone.0046211. Epub 2012 Sep 27.

PMID:
23029438
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.

Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J.

Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.

PMID:
23644548
[PubMed - indexed for MEDLINE]
6.

Fine de novo sequencing of a fungal genome using only SOLiD short read data: verification on Aspergillus oryzae RIB40.

Umemura M, Koyama Y, Takeda I, Hagiwara H, Ikegami T, Koike H, Machida M.

PLoS One. 2013 May 7;8(5):e63673. doi: 10.1371/journal.pone.0063673. Print 2013.

PMID:
23667655
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Comparison of sequence reads obtained from three next-generation sequencing platforms.

Suzuki S, Ono N, Furusawa C, Ying BW, Yomo T.

PLoS One. 2011;6(5):e19534. doi: 10.1371/journal.pone.0019534. Epub 2011 May 17.

PMID:
21611185
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology.

Ruan J, Jiang L, Chong Z, Gong Q, Li H, Li C, Tao Y, Zheng C, Zhai W, Turissini D, Cannon CH, Lu X, Wu CI.

BMC Genomics. 2013 Oct 17;14:711. doi: 10.1186/1471-2164-14-711.

PMID:
24134808
[PubMed - in process]
Free PMC Article
9.

Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination.

Van Nieuwerburgh F, Thompson RC, Ledesma J, Deforce D, Gaasterland T, Ordoukhanian P, Head SR.

Nucleic Acids Res. 2012 Feb;40(3):e24. doi: 10.1093/nar/gkr1000. Epub 2011 Nov 29.

PMID:
22127871
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Identification of optimum sequencing depth especially for de novo genome assembly of small genomes using next generation sequencing data.

Desai A, Marwah VS, Yadav A, Jha V, Dhaygude K, Bangar U, Kulkarni V, Jere A.

PLoS One. 2013 Apr 12;8(4):e60204. doi: 10.1371/journal.pone.0060204. Print 2013.

PMID:
23593174
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.

Hernandez D, François P, Farinelli L, Osterås M, Schrenzel J.

Genome Res. 2008 May;18(5):802-9. doi: 10.1101/gr.072033.107. Epub 2008 Mar 10.

PMID:
18332092
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A new strategy for genome assembly using short sequence reads and reduced representation libraries.

Young AL, Abaan HO, Zerbino D, Mullikin JC, Birney E, Margulies EH.

Genome Res. 2010 Feb;20(2):249-56. doi: 10.1101/gr.097956.109.

PMID:
20123915
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Accurate multiplex polony sequencing of an evolved bacterial genome.

Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM.

Science. 2005 Sep 9;309(5741):1728-32. Epub 2005 Aug 4.

PMID:
16081699
[PubMed - indexed for MEDLINE]
Free Article
14.

Improving the efficiency of genomic loci capture using oligonucleotide arrays for high throughput resequencing.

Lee H, O'Connor BD, Merriman B, Funari VA, Homer N, Chen Z, Cohn DH, Nelson SF.

BMC Genomics. 2009 Dec 31;10:646. doi: 10.1186/1471-2164-10-646.

PMID:
20043857
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Construction of bacterial artificial chromosome libraries from the parasitic nematode Brugia malayi and physical mapping of the genome of its Wolbachia endosymbiont.

Foster JM, Kumar S, Ganatra MB, Kamal IH, Ware J, Ingram J, Pope-Chappell J, Guiliano D, Whitton C, Daub J, Blaxter ML, Slatko BE.

Int J Parasitol. 2004 May;34(6):733-46.

PMID:
15111095
[PubMed - indexed for MEDLINE]
16.

Preparation of genome-wide DNA fragment libraries using bisulfite in polyacrylamide gel electrophoresis slices with formamide denaturation and quality control for massively parallel sequencing by oligonucleotide ligation and detection.

Ranade SS, Chung CB, Zon G, Boyd VL.

Anal Biochem. 2009 Jul 15;390(2):126-35. doi: 10.1016/j.ab.2009.04.020. Epub 2009 Apr 18.

PMID:
19379703
[PubMed - indexed for MEDLINE]
17.

GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.

Gritsenko AA, Nijkamp JF, Reinders MJ, de Ridder D.

Bioinformatics. 2012 Jun 1;28(11):1429-37. doi: 10.1093/bioinformatics/bts175. Epub 2012 Apr 6.

PMID:
22492642
[PubMed - indexed for MEDLINE]
Free Article
18.

Parallel, tag-directed assembly of locally derived short sequence reads.

Hiatt JB, Patwardhan RP, Turner EH, Lee C, Shendure J.

Nat Methods. 2010 Feb;7(2):119-22. doi: 10.1038/nmeth.1416. Epub 2010 Jan 17.

PMID:
20081835
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A pilot study for channel catfish whole genome sequencing and de novo assembly.

Jiang Y, Lu J, Peatman E, Kucuktas H, Liu S, Wang S, Sun F, Liu Z.

BMC Genomics. 2011 Dec 22;12:629. doi: 10.1186/1471-2164-12-629.

PMID:
22192763
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome.

Quinn NL, Levenkova N, Chow W, Bouffard P, Boroevich KA, Knight JR, Jarvie TP, Lubieniecki KP, Desany BA, Koop BF, Harkins TT, Davidson WS.

BMC Genomics. 2008 Aug 28;9:404. doi: 10.1186/1471-2164-9-404.

PMID:
18755037
[PubMed - indexed for MEDLINE]
Free PMC Article

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