Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 108

1.

Unsupervised classification for tiling arrays: ChIP-chip and transcriptome.

Bérard C, Martin-Magniette ML, Brunaud V, Aubourg S, Robin S.

Stat Appl Genet Mol Biol. 2011 Nov 1;10(1). pii: /j/sagmb.2011.10.issue-1/1544-6115.1692/1544-6115.1692.xml. doi: 10.2202/1544-6115.1692.

PMID:
23089815
[PubMed - indexed for MEDLINE]
2.

AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling.

Rehrauer H, Aquino C, Gruissem W, Henz SR, Hilson P, Laubinger S, Naouar N, Patrignani A, Rombauts S, Shu H, Van de Peer Y, Vuylsteke M, Weigel D, Zeller G, Hennig L.

Plant Physiol. 2010 Feb;152(2):487-99. doi: 10.1104/pp.109.150185. Epub 2009 Dec 23.

PMID:
20032078
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates.

Bérard C, Seifert M, Mary-Huard T, Martin-Magniette ML.

BMC Bioinformatics. 2013 Sep 9;14:271. doi: 10.1186/1471-2105-14-271.

PMID:
24015679
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

Du J, Rozowsky JS, Korbel JO, Zhang ZD, Royce TE, Schultz MH, Snyder M, Gerstein M.

Bioinformatics. 2006 Dec 15;22(24):3016-24. Epub 2006 Oct 12.

PMID:
17038339
[PubMed - indexed for MEDLINE]
Free Article
5.

Applications of DNA tiling arrays for whole-genome analysis.

Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR.

Genomics. 2005 Jan;85(1):1-15. Review. Erratum in: Genomics. 2005 May;85(5):655. Chan, Simon [added]; Sundaresan, Ambika [added]; Chen, Huaming [added]; Jacobsen, Steven E [added].

PMID:
15607417
[PubMed - indexed for MEDLINE]
6.

Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes.

Naouar N, Vandepoele K, Lammens T, Casneuf T, Zeller G, van Hummelen P, Weigel D, Rätsch G, Inzé D, Kuiper M, De Veylder L, Vuylsteke M.

Plant J. 2009 Jan;57(1):184-94. doi: 10.1111/j.1365-313X.2008.03662.x. Epub 2008 Sep 19.

PMID:
18764924
[PubMed - indexed for MEDLINE]
7.

HAT: hypergeometric analysis of tiling-arrays with application to promoter-GeneChip data.

Taskesen E, Beekman R, de Ridder J, Wouters BJ, Peeters JK, Touw IP, Reinders MJ, Delwel R.

BMC Bioinformatics. 2010 May 21;11:275. doi: 10.1186/1471-2105-11-275.

PMID:
20492700
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Dynamic probe selection for studying microbial transcriptome with high-density genomic tiling microarrays.

Høvik H, Chen T.

BMC Bioinformatics. 2010 Feb 9;11:82. doi: 10.1186/1471-2105-11-82.

PMID:
20144223
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Design of tiling arrays and their application to bacterial transcriptome analysis.

Akama T, Nakamura K, Tanoue A, Suzuki K.

Methods Mol Biol. 2013;1067:23-34. doi: 10.1007/978-1-62703-607-8_2.

PMID:
23975783
[PubMed - indexed for MEDLINE]
10.

Combining chromatin immunoprecipitation and oligonucleotide tiling arrays (ChIP-Chip) for functional genomic studies.

Eeckhoute J, Lupien M, Brown M.

Methods Mol Biol. 2009;556:155-64. doi: 10.1007/978-1-60327-192-9_11.

PMID:
19488877
[PubMed - indexed for MEDLINE]
11.

Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.

Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, Phillips GN Jr, Markley JL, Sussman MR.

Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4453-8. Epub 2005 Mar 8.

PMID:
15755812
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Utilizing tiling microarrays for whole-genome analysis in plants.

Gregory BD, Yazaki J, Ecker JR.

Plant J. 2008 Feb;53(4):636-44. doi: 10.1111/j.1365-313X.2007.03320.x. Review.

PMID:
18269573
[PubMed - indexed for MEDLINE]
13.

Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data.

Seifert M, Keilwagen J, Strickert M, Grosse I.

Bioinformatics. 2009 Aug 15;25(16):2118-25. doi: 10.1093/bioinformatics/btp276. Epub 2009 Apr 28.

PMID:
19401402
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays.

Zeller G, Henz SR, Widmer CK, Sachsenberg T, Rätsch G, Weigel D, Laubinger S.

Plant J. 2009 Jun;58(6):1068-82. doi: 10.1111/j.1365-313X.2009.03835.x. Epub 2009 Feb 13. Erratum in: Plant J. 2009 Dec;60(5):929.

PMID:
19222804
[PubMed - indexed for MEDLINE]
15.

CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data.

Cesaroni M, Cittaro D, Brozzi A, Pelicci PG, Luzi L.

Bioinformatics. 2008 Dec 15;24(24):2918-20. doi: 10.1093/bioinformatics/btn542. Epub 2008 Oct 21.

PMID:
18945685
[PubMed - indexed for MEDLINE]
Free Article
16.

Metaanalysis of ChIP-chip data.

Engelhorn J, Turck F.

Methods Mol Biol. 2010;631:185-207. doi: 10.1007/978-1-60761-646-7_14.

PMID:
20204876
[PubMed - indexed for MEDLINE]
17.

Genome-wide mapping of protein-DNA interaction by chromatin immunoprecipitation and DNA microarray hybridization (ChIP-chip). Part A: ChIP-chip molecular methods.

Reimer JJ, Turck F.

Methods Mol Biol. 2010;631:139-60. doi: 10.1007/978-1-60761-646-7_12.

PMID:
20204874
[PubMed - indexed for MEDLINE]
18.

Tiling array-driven elucidation of transcriptional structures based on maximum-likelihood and Markov models.

Toyoda T, Shinozaki K.

Plant J. 2005 Aug;43(4):611-21.

PMID:
16098113
[PubMed - indexed for MEDLINE]
19.

Arabidopsis tiling array analysis to identify the stress-responsive genes.

Matsui A, Ishida J, Morosawa T, Okamoto M, Kim JM, Kurihara Y, Kawashima M, Tanaka M, To TK, Nakaminami K, Kaminuma E, Endo TA, Mochizuki Y, Kawaguchi S, Kobayashi N, Shinozaki K, Toyoda T, Seki M.

Methods Mol Biol. 2010;639:141-55. doi: 10.1007/978-1-60761-702-0_8.

PMID:
20387044
[PubMed - indexed for MEDLINE]
20.

Transcript profiling in Arabidopsis with genome tiling microarrays.

Coman D, Gruissem W, Hennig L.

Methods Mol Biol. 2013;1067:35-49. doi: 10.1007/978-1-62703-607-8_3.

PMID:
23975784
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk