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Results: 1 to 20 of 93

1.

Exploring the energy landscape of nucleic acid hairpins using laser temperature-jump and microfluidic mixing.

Narayanan R, Zhu L, Velmurugu Y, Roca J, Kuznetsov SV, Prehna G, Lapidus LJ, Ansari A.

J Am Chem Soc. 2012 Nov 21;134(46):18952-63. doi: 10.1021/ja301218e. Epub 2012 Nov 7.

PMID:
23078026
[PubMed - indexed for MEDLINE]
2.

Folding of human telomerase RNA pseudoknot using ion-jump and temperature-quench simulations.

Biyun S, Cho SS, Thirumalai D.

J Am Chem Soc. 2011 Dec 21;133(50):20634-43. doi: 10.1021/ja2092823. Epub 2011 Nov 30.

PMID:
22082261
[PubMed - indexed for MEDLINE]
3.

Probing the complete folding trajectory of a DNA hairpin using dual beam fluorescence fluctuation spectroscopy.

Jung J, Ihly R, Scott E, Yu M, Van Orden A.

J Phys Chem B. 2008 Jan 10;112(1):127-33. Epub 2007 Dec 13.

PMID:
18076153
[PubMed - indexed for MEDLINE]
4.

Laser temperature jump study of the helix<==>coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' model.

Thompson PA, Eaton WA, Hofrichter J.

Biochemistry. 1997 Jul 29;36(30):9200-10.

PMID:
9230053
[PubMed - indexed for MEDLINE]
5.

Loop and stem dynamics during RNA hairpin folding and unfolding.

Sarkar K, Nguyen DA, Gruebele M.

RNA. 2010 Dec;16(12):2427-34. doi: 10.1261/rna.2253310. Epub 2010 Oct 20.

PMID:
20962040
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Kinetics of conformational changes in tRNA Phe (yeast) as studied by the fluorescence of the Y-base and of formycin substituted for the 3'-terminal adenine.

Coutts SM, Riesner D, Römer R, Rabl CR, Maass G.

Biophys Chem. 1975 Oct;3(4):275-89.

PMID:
1103985
[PubMed - indexed for MEDLINE]
7.

Specificity of the initial collapse in the folding of the cold shock protein.

Magg C, Kubelka J, Holtermann G, Haas E, Schmid FX.

J Mol Biol. 2006 Jul 28;360(5):1067-80. Epub 2006 Jun 16.

PMID:
16815441
[PubMed - indexed for MEDLINE]
8.

Dynamics of one-state downhill protein folding.

Li P, Oliva FY, Naganathan AN, Muñoz V.

Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):103-8. doi: 10.1073/pnas.0802986106. Epub 2008 Dec 31.

PMID:
19118204
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Nanosecond folding dynamics of a three-stranded beta-sheet.

Xu Y, Purkayastha P, Gai F.

J Am Chem Soc. 2006 Dec 13;128(49):15836-42.

PMID:
17147395
[PubMed - indexed for MEDLINE]
10.

Single-molecule nonequilibrium periodic Mg2+-concentration jump experiments reveal details of the early folding pathways of a large RNA.

Qu X, Smith GJ, Lee KT, Sosnick TR, Pan T, Scherer NF.

Proc Natl Acad Sci U S A. 2008 May 6;105(18):6602-7. doi: 10.1073/pnas.0801436105. Epub 2008 Apr 30.

PMID:
18448679
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Direct observation of downhill folding of lambda-repressor in a microfluidic mixer.

DeCamp SJ, Naganathan AN, Waldauer SA, Bakajin O, Lapidus LJ.

Biophys J. 2009 Sep 16;97(6):1772-7. doi: 10.1016/j.bpj.2009.07.003.

PMID:
19751683
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Unique features of the folding landscape of a repeat protein revealed by pressure perturbation.

Rouget JB, Schroer MA, Jeworrek C, Pühse M, Saldana JL, Bessin Y, Tolan M, Barrick D, Winter R, Royer CA.

Biophys J. 2010 Jun 2;98(11):2712-21. doi: 10.1016/j.bpj.2010.02.044.

PMID:
20513416
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Core formation in apomyoglobin: probing the upper reaches of the folding energy landscape.

Gulotta M, Gilmanshin R, Buscher TC, Callender RH, Dyer RB.

Biochemistry. 2001 May 1;40(17):5137-43.

PMID:
11318635
[PubMed - indexed for MEDLINE]
14.

Evidence of multiple folding pathways for the villin headpiece subdomain.

Zhu L, Ghosh K, King M, Cellmer T, Bakajin O, Lapidus LJ.

J Phys Chem B. 2011 Nov 3;115(43):12632-7. doi: 10.1021/jp206238y. Epub 2011 Oct 12.

PMID:
21923150
[PubMed - indexed for MEDLINE]
15.

Rearrangement of partially ordered stacked conformations contributes to the rugged energy landscape of a small RNA hairpin.

Stancik AL, Brauns EB.

Biochemistry. 2008 Oct 14;47(41):10834-40. doi: 10.1021/bi801170c. Epub 2008 Sep 23.

PMID:
18808148
[PubMed - indexed for MEDLINE]
16.

Estimating free-energy barrier heights for an ultrafast folding protein from calorimetric and kinetic data.

Godoy-Ruiz R, Henry ER, Kubelka J, Hofrichter J, Muñoz V, Sanchez-Ruiz JM, Eaton WA.

J Phys Chem B. 2008 May 15;112(19):5938-49. doi: 10.1021/jp0757715. Epub 2008 Feb 16.

PMID:
18278894
[PubMed - indexed for MEDLINE]
17.

Folding and aggregation kinetics of a beta-hairpin.

Muñoz V, Ghirlando R, Blanco FJ, Jas GS, Hofrichter J, Eaton WA.

Biochemistry. 2006 Jun 13;45(23):7023-35.

PMID:
16752893
[PubMed - indexed for MEDLINE]
18.

Insights on the role of nucleic acid/protein interactions in chaperoned nucleic acid rearrangements of HIV-1 reverse transcription.

Liu HW, Zeng Y, Landes CF, Kim YJ, Zhu Y, Ma X, Vo MN, Musier-Forsyth K, Barbara PF.

Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5261-7. Epub 2007 Mar 19.

PMID:
17372205
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Folding and unfolding kinetics of DNA hairpins in flowing solution by multiparameter fluorescence correlation spectroscopy.

Jung J, Van Orden A.

J Phys Chem B. 2005 Mar 3;109(8):3648-57.

PMID:
16851403
[PubMed - indexed for MEDLINE]
20.

Infrared study of the stability and folding kinetics of a 15-residue beta-hairpin.

Xu Y, Oyola R, Gai F.

J Am Chem Soc. 2003 Dec 17;125(50):15388-94.

PMID:
14664583
[PubMed - indexed for MEDLINE]

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