Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 80

1.

GWASTools: an R/Bioconductor package for quality control and analysis of genome-wide association studies.

Gogarten SM, Bhangale T, Conomos MP, Laurie CA, McHugh CP, Painter I, Zheng X, Crosslin DR, Levine D, Lumley T, Nelson SC, Rice K, Shen J, Swarnkar R, Weir BS, Laurie CC.

Bioinformatics. 2012 Dec 15;28(24):3329-31. doi: 10.1093/bioinformatics/bts610. Epub 2012 Oct 10.

PMID:
23052040
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

IPGWAS: an integrated pipeline for rational quality control and association analysis of genome-wide genetic studies.

Fan YH, Song YQ.

Biochem Biophys Res Commun. 2012 Jun 8;422(3):363-8. doi: 10.1016/j.bbrc.2012.04.117. Epub 2012 Apr 30.

PMID:
22564732
[PubMed - indexed for MEDLINE]
3.

SNPpy--database management for SNP data from genome wide association studies.

Mitha F, Herodotou H, Borisov N, Jiang C, Yoder J, Owzar K.

PLoS One. 2011;6(10):e24982. doi: 10.1371/journal.pone.0024982. Epub 2011 Oct 19.

PMID:
22039405
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Quality control procedures for genome-wide association studies.

Turner S, Armstrong LL, Bradford Y, Carlson CS, Crawford DC, Crenshaw AT, de Andrade M, Doheny KF, Haines JL, Hayes G, Jarvik G, Jiang L, Kullo IJ, Li R, Ling H, Manolio TA, Matsumoto M, McCarty CA, McDavid AN, Mirel DB, Paschall JE, Pugh EW, Rasmussen LV, Wilke RA, Zuvich RL, Ritchie MD.

Curr Protoc Hum Genet. 2011 Jan;Chapter 1:Unit1.19. doi: 10.1002/0471142905.hg0119s68.

PMID:
21234875
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Quality control and quality assurance in genotypic data for genome-wide association studies.

Laurie CC, Doheny KF, Mirel DB, Pugh EW, Bierut LJ, Bhangale T, Boehm F, Caporaso NE, Cornelis MC, Edenberg HJ, Gabriel SB, Harris EL, Hu FB, Jacobs KB, Kraft P, Landi MT, Lumley T, Manolio TA, McHugh C, Painter I, Paschall J, Rice JP, Rice KM, Zheng X, Weir BS; GENEVA Investigators.

Genet Epidemiol. 2010 Sep;34(6):591-602. doi: 10.1002/gepi.20516.

PMID:
20718045
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Evoker: a visualization tool for genotype intensity data.

Morris JA, Randall JC, Maller JB, Barrett JC.

Bioinformatics. 2010 Jul 15;26(14):1786-7. doi: 10.1093/bioinformatics/btq280. Epub 2010 May 27.

PMID:
20507892
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

On quality control measures in genome-wide association studies: a test to assess the genotyping quality of individual probands in family-based association studies and an application to the HapMap data.

Fardo DW, Ionita-Laza I, Lange C.

PLoS Genet. 2009 Jul;5(7):e1000572. doi: 10.1371/journal.pgen.1000572. Epub 2009 Jul 24.

PMID:
19629167
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

GWAS analyzer: integrating genotype, phenotype and public annotation data for genome-wide association study analysis.

Fong C, Ko DC, Wasnick M, Radey M, Miller SI, Brittnacher M.

Bioinformatics. 2010 Feb 15;26(4):560-4. doi: 10.1093/bioinformatics/btp714. Epub 2010 Jan 6.

PMID:
20053839
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

SNP-based pathway enrichment analysis for genome-wide association studies.

Weng L, Macciardi F, Subramanian A, Guffanti G, Potkin SG, Yu Z, Xie X.

BMC Bioinformatics. 2011 Apr 15;12:99. doi: 10.1186/1471-2105-12-99.

PMID:
21496265
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

GWAtoolbox: an R package for fast quality control and handling of genome-wide association studies meta-analysis data.

Fuchsberger C, Taliun D, Pramstaller PP, Pattaro C; CKDGen consortium.

Bioinformatics. 2012 Feb 1;28(3):444-5. doi: 10.1093/bioinformatics/btr679. Epub 2011 Dec 8.

PMID:
22155946
[PubMed - indexed for MEDLINE]
Free Article
11.

R-Gada: a fast and flexible pipeline for copy number analysis in association studies.

Pique-Regi R, Cáceres A, González JR.

BMC Bioinformatics. 2010 Jul 16;11:380. doi: 10.1186/1471-2105-11-380.

PMID:
20637081
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Pitfalls of merging GWAS data: lessons learned in the eMERGE network and quality control procedures to maintain high data quality.

Zuvich RL, Armstrong LL, Bielinski SJ, Bradford Y, Carlson CS, Crawford DC, Crenshaw AT, de Andrade M, Doheny KF, Haines JL, Hayes MG, Jarvik GP, Jiang L, Kullo IJ, Li R, Ling H, Manolio TA, Matsumoto ME, McCarty CA, McDavid AN, Mirel DB, Olson LM, Paschall JE, Pugh EW, Rasmussen LV, Rasmussen-Torvik LJ, Turner SD, Wilke RA, Ritchie MD.

Genet Epidemiol. 2011 Dec;35(8):887-98. doi: 10.1002/gepi.20639.

PMID:
22125226
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

SNPTransformer: a lightweight toolkit for genome-wide association studies.

Dong C.

Genomics Proteomics Bioinformatics. 2010 Dec;8(4):268-73. doi: 10.1016/S1672-0229(10)60029-0.

PMID:
21382596
[PubMed - indexed for MEDLINE]
Free Article
14.

OpenADAM: an open source genome-wide association data management system for Affymetrix SNP arrays.

Yeung JM, Sham PC, Chan AS, Cherny SS.

BMC Genomics. 2008 Dec 31;9:636. doi: 10.1186/1471-2164-9-636.

PMID:
19117518
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies.

Wang L, Jia P, Wolfinger RD, Chen X, Grayson BL, Aune TM, Zhao Z.

Bioinformatics. 2011 Mar 1;27(5):686-92. doi: 10.1093/bioinformatics/btq728. Epub 2011 Jan 25.

PMID:
21266443
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Postgwas: advanced GWAS interpretation in R.

Hiersche M, Rühle F, Stoll M.

PLoS One. 2013 Aug 19;8(8):e71775. doi: 10.1371/journal.pone.0071775. eCollection 2013.

PMID:
23977141
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Quality control for genome-wide association studies.

Gondro C, Lee SH, Lee HK, Porto-Neto LR.

Methods Mol Biol. 2013;1019:129-47. doi: 10.1007/978-1-62703-447-0_5. Review.

PMID:
23756889
[PubMed - indexed for MEDLINE]
18.

rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure.

Gautier M, Vitalis R.

Bioinformatics. 2012 Apr 15;28(8):1176-7. doi: 10.1093/bioinformatics/bts115. Epub 2012 Mar 7.

PMID:
22402612
[PubMed - indexed for MEDLINE]
Free Article
19.

Snat: a SNP annotation tool for bovine by integrating various sources of genomic information.

Jiang J, Jiang L, Zhou B, Fu W, Liu JF, Zhang Q.

BMC Genet. 2011 Oct 7;12:85. doi: 10.1186/1471-2156-12-85.

PMID:
21982513
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

GWAF: an R package for genome-wide association analyses with family data.

Chen MH, Yang Q.

Bioinformatics. 2010 Feb 15;26(4):580-1. doi: 10.1093/bioinformatics/btp710. Epub 2009 Dec 29.

PMID:
20040588
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk