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Similar articles for PubMed (Select 23049964)

1.

Porcine tissue-specific regulatory networks derived from meta-analysis of the transcriptome.

Pérez-Montarelo D, Hudson NJ, Fernández AI, Ramayo-Caldas Y, Dalrymple BP, Reverter A.

PLoS One. 2012;7(9):e46159. doi: 10.1371/journal.pone.0046159. Epub 2012 Sep 26.

2.

From SNP co-association to RNA co-expression: novel insights into gene networks for intramuscular fatty acid composition in porcine.

Ramayo-Caldas Y, Ballester M, Fortes MR, Esteve-Codina A, Castelló A, Noguera JL, Fernández AI, Pérez-Enciso M, Reverter A, Folch JM.

BMC Genomics. 2014 Mar 26;15:232. doi: 10.1186/1471-2164-15-232.

3.

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.

Marbach D, Roy S, Ay F, Meyer PE, Candeias R, Kahveci T, Bristow CA, Kellis M.

Genome Res. 2012 Jul;22(7):1334-49. doi: 10.1101/gr.127191.111. Epub 2012 Mar 28.

4.

Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory network.

Busser BW, Huang D, Rogacki KR, Lane EA, Shokri L, Ni T, Gamble CE, Gisselbrecht SS, Zhu J, Bulyk ML, Ovcharenko I, Michelson AM.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20768-73. doi: 10.1073/pnas.1210415109. Epub 2012 Nov 26.

5.

TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information.

Liu Q, Tan Y, Huang T, Ding G, Tu Z, Liu L, Li Y, Dai H, Xie L.

BMC Bioinformatics. 2010 Dec 14;11 Suppl 11:S5. doi: 10.1186/1471-2105-11-S11-S5.

6.

Meta-analysis of expression signatures of muscle atrophy: gene interaction networks in early and late stages.

Calura E, Cagnin S, Raffaello A, Laveder P, Lanfranchi G, Romualdi C.

BMC Genomics. 2008 Dec 23;9:630. doi: 10.1186/1471-2164-9-630.

7.

Genetic variability of transcript abundance in pig peri-mortem skeletal muscle: eQTL localized genes involved in stress response, cell death, muscle disorders and metabolism.

Liaubet L, Lobjois V, Faraut T, Tircazes A, Benne F, Iannuccelli N, Pires J, Glénisson J, Robic A, Le Roy P, Sancristobal M, Cherel P.

BMC Genomics. 2011 Nov 4;12:548. doi: 10.1186/1471-2164-12-548.

8.

Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach.

Linde J, Hortschansky P, Fazius E, Brakhage AA, Guthke R, Haas H.

BMC Syst Biol. 2012 Jan 19;6:6. doi: 10.1186/1752-0509-6-6.

9.

Integrating the interactome and the transcriptome of Drosophila.

Murali T, Pacifico S, Finley RL Jr.

BMC Bioinformatics. 2014 Jun 10;15:177. doi: 10.1186/1471-2105-15-177.

10.
11.

Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells.

Mason MJ, Fan G, Plath K, Zhou Q, Horvath S.

BMC Genomics. 2009 Jul 20;10:327. doi: 10.1186/1471-2164-10-327.

12.

Meta-analytical biomarker search of EST expression data reveals three differentially expressed candidates.

Wu TH, Chu LJ, Wang JC, Chen TW, Tien YJ, Lin WC, Ng WV.

BMC Genomics. 2012;13 Suppl 7:S12. doi: 10.1186/1471-2164-13-S7-S12. Epub 2012 Dec 13.

13.

Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities.

Fu Y, Jarboe LR, Dickerson JA.

BMC Bioinformatics. 2011 Jun 13;12:233. doi: 10.1186/1471-2105-12-233.

14.

Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks.

Colecchia F, Kottwitz D, Wagner M, Pfenninger CV, Thiel G, Tamm I, Peterson C, Nuber UA.

Nucleic Acids Res. 2009 Jun;37(11):e82. doi: 10.1093/nar/gkp311. Epub 2009 May 13.

15.

Gene-sharing networks reveal organizing principles of transcriptomes in Arabidopsis and other multicellular organisms.

Li S, Pandey S, Gookin TE, Zhao Z, Wilson L, Assmann SM.

Plant Cell. 2012 Apr;24(4):1362-78. doi: 10.1105/tpc.111.094748. Epub 2012 Apr 18.

16.

Trimming of mammalian transcriptional networks using network component analysis.

Tran LM, Hyduke DR, Liao JC.

BMC Bioinformatics. 2010 Oct 13;11:511. doi: 10.1186/1471-2105-11-511.

17.

Identification of transcriptional regulatory networks specific to pilocytic astrocytoma.

Deshmukh H, Yu J, Shaik J, MacDonald TJ, Perry A, Payton JE, Gutmann DH, Watson MA, Nagarajan R.

BMC Med Genomics. 2011 Jul 11;4:57. doi: 10.1186/1755-8794-4-57.

18.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

19.
20.

A modulator based regulatory network for ERα signaling pathway.

Wu HY, Zheng P, Jiang G, Liu Y, Nephew KP, Huang TH, Li L.

BMC Genomics. 2012;13 Suppl 6:S6. doi: 10.1186/1471-2164-13-S6-S6. Epub 2012 Oct 26.

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