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Results: 1 to 20 of 150

Related Citations for PubMed (Select 23049488)

1.

GPU/CPU Algorithm for Generalized Born/Solvent-Accessible Surface Area Implicit Solvent Calculations.

Tanner DE, Phillips JC, Schulten K.

J Chem Theory Comput. 2012 Jul 10;8(7):2521-2530. Epub 2012 Jun 15.

2.

CPU-GPU hybrid accelerating the Zuker algorithm for RNA secondary structure prediction applications.

Lei G, Dou Y, Wan W, Xia F, Li R, Ma M, Zou D.

BMC Genomics. 2012;13 Suppl 1:S14. doi: 10.1186/1471-2164-13-S1-S14. Epub 2012 Jan 17.

3.

Fast on-site Monte Carlo tool for dose calculations in CT applications.

Chen W, Kolditz D, Beister M, Bohle R, Kalender WA.

Med Phys. 2012 Jun;39(6):2985-96. doi: 10.1118/1.4711748.

4.

Exploiting graphics processing units for computational biology and bioinformatics.

Payne JL, Sinnott-Armstrong NA, Moore JH.

Interdiscip Sci. 2010 Sep;2(3):213-20. doi: 10.1007/s12539-010-0002-4. Epub 2010 Jul 25.

5.

CUSA and CUDE: GPU-accelerated methods for estimating solvent accessible surface area and desolvation.

Dynerman D, Butzlaff E, Mitchell JC.

J Comput Biol. 2009 Apr;16(4):523-37. doi: 10.1089/cmb.2008.0157.

PMID:
19361325
6.

Accelerating molecular modeling applications with graphics processors.

Stone JE, Phillips JC, Freddolino PL, Hardy DJ, Trabuco LG, Schulten K.

J Comput Chem. 2007 Dec;28(16):2618-40.

PMID:
17894371
7.

Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems.

Teodoro G, Kurc TM, Pan T, Cooper LA, Kong J, Widener P, Saltz JH.

IPDPS. 2012 May;2012:1093-1104.

8.

A GPU solvent-solvent interaction calculation accelerator for biomolecular simulations using the GROMOS software.

Schmid N, Bötschi M, van Gunsteren WF.

J Comput Chem. 2010 Jun;31(8):1636-43. doi: 10.1002/jcc.21447.

PMID:
20127715
9.

High performance computing for deformable image registration: towards a new paradigm in adaptive radiotherapy.

Samant SS, Xia J, Muyan-Ozcelik P, Owens JD.

Med Phys. 2008 Aug;35(8):3546-53.

PMID:
18777915
10.

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born.

Götz AW, Williamson MJ, Xu D, Poole D, Le Grand S, Walker RC.

J Chem Theory Comput. 2012 May 8;8(5):1542-1555. Epub 2012 Mar 26.

11.

Parallelized computation for computer simulation of electrocardiograms using personal computers with multi-core CPU and general-purpose GPU.

Shen W, Wei D, Xu W, Zhu X, Yuan S.

Comput Methods Programs Biomed. 2010 Oct;100(1):87-96. doi: 10.1016/j.cmpb.2010.06.015. Epub 2010 Jul 31.

PMID:
20674066
12.

A fast forward projection using multithreads for multirays on GPUs in medical image reconstruction.

Chou CY, Chuo YY, Hung Y, Wang W.

Med Phys. 2011 Jul;38(7):4052-65.

PMID:
21859004
13.

Hybrid computing: CPU+GPU co-processing and its application to tomographic reconstruction.

Agulleiro JI, Vázquez F, Garzón EM, Fernández JJ.

Ultramicroscopy. 2012 Apr;115:109-14. doi: 10.1016/j.ultramic.2012.02.003. Epub 2012 Feb 18.

PMID:
22475372
14.

GPU accelerated generation of digitally reconstructed radiographs for 2-D/3-D image registration.

Dorgham OM, Laycock SD, Fisher MH.

IEEE Trans Biomed Eng. 2012 Sep;59(9):2594-603. doi: 10.1109/TBME.2012.2207898. Epub 2012 Jul 11.

PMID:
22801484
15.

GPU-based fast gamma index calculation.

Gu X, Jia X, Jiang SB.

Phys Med Biol. 2011 Mar 7;56(5):1431-41. doi: 10.1088/0031-9155/56/5/014. Epub 2011 Feb 11.

16.

Accelerating epistasis analysis in human genetics with consumer graphics hardware.

Sinnott-Armstrong NA, Greene CS, Cancare F, Moore JH.

BMC Res Notes. 2009 Jul 24;2:149. doi: 10.1186/1756-0500-2-149.

17.

hybridMANTIS: a CPU-GPU Monte Carlo method for modeling indirect x-ray detectors with columnar scintillators.

Sharma D, Badal A, Badano A.

Phys Med Biol. 2012 Apr 21;57(8):2357-72. doi: 10.1088/0031-9155/57/8/2357. Epub 2012 Apr 2.

PMID:
22469917
18.

Revisiting Molecular Dynamics on a CPU/GPU system: Water Kernel and SHAKE Parallelization.

Ruymgaart AP, Elber R.

J Chem Theory Comput. 2012 Nov 13;8(11):4624-4636. Epub 2012 Aug 21.

19.

Accelerated event-by-event Monte Carlo microdosimetric calculations of electrons and protons tracks on a multi-core CPU and a CUDA-enabled GPU.

Kalantzis G, Tachibana H.

Comput Methods Programs Biomed. 2014;113(1):116-25. doi: 10.1016/j.cmpb.2013.09.009. Epub 2013 Sep 20.

PMID:
24113420
20.

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions.

Liu Y, Wirawan A, Schmidt B.

BMC Bioinformatics. 2013 Apr 4;14:117. doi: 10.1186/1471-2105-14-117.

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