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Results: 1 to 20 of 73

1.

Mining SOM expression portraits: feature selection and integrating concepts of molecular function.

Wirth H, von Bergen M, Binder H.

BioData Min. 2012 Oct 8;5(1):18. doi: 10.1186/1756-0381-5-18.

PMID:
23043905
[PubMed]
Free PMC Article
2.

Expression cartography of human tissues using self organizing maps.

Wirth H, Löffler M, von Bergen M, Binder H.

BMC Bioinformatics. 2011 Jul 27;12:306. doi: 10.1186/1471-2105-12-306.

PMID:
21794127
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Gene expression analysis in clear cell renal cell carcinoma using gene set enrichment analysis for biostatistical management.

Maruschke M, Reuter D, Koczan D, Hakenberg OW, Thiesen HJ.

BJU Int. 2011 Jul;108(2 Pt 2):E29-35. doi: 10.1111/j.1464-410X.2010.09794.x. Epub 2011 Mar 16.

PMID:
21435154
[PubMed - indexed for MEDLINE]
4.

Improving cluster visualization in self-organizing maps: application in gene expression data analysis.

Fernandez EA, Balzarini M.

Comput Biol Med. 2007 Dec;37(12):1677-89. Epub 2007 Jun 4.

PMID:
17544390
[PubMed - indexed for MEDLINE]
5.

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

Jeffery IB, Higgins DG, Culhane AC.

BMC Bioinformatics. 2006 Jul 26;7:359.

PMID:
16872483
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study.

Wang J, Delabie J, Aasheim H, Smeland E, Myklebost O.

BMC Bioinformatics. 2002 Nov 24;3:36. Epub 2002 Nov 24.

PMID:
12445336
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Analysis and visualization of gene expression data using self-organizing maps.

Nikkilä J, Törönen P, Kaski S, Venna J, Castrén E, Wong G.

Neural Netw. 2002 Oct-Nov;15(8-9):953-66.

PMID:
12416686
[PubMed - indexed for MEDLINE]
8.

Application of gene shaving and mixture models to cluster microarray gene expression data.

Do KA, McLachlan GJ, Bean R, Wen S.

Cancer Inform. 2007;5:25-43. Epub 2007 Apr 2.

PMID:
19390667
[PubMed]
Free PMC Article
9.

Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis.

Kim TM, Chung YJ, Rhyu MG, Jung MH.

BMC Bioinformatics. 2007 Nov 17;8:453.

PMID:
18021416
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps.

Brameier M, Wiuf C.

J Biomed Inform. 2007 Apr;40(2):160-73. Epub 2006 May 20.

PMID:
16824804
[PubMed - indexed for MEDLINE]
Free Article
11.

Application of Multi-SOM clustering approach to macrophage gene expression analysis.

Ghouila A, Yahia SB, Malouche D, Jmel H, Laouini D, Guerfali FZ, Abdelhak S.

Infect Genet Evol. 2009 May;9(3):328-36. doi: 10.1016/j.meegid.2008.09.009. Epub 2008 Oct 17.

PMID:
18992849
[PubMed - indexed for MEDLINE]
12.

MALDI-typing of infectious algae of the genus Prototheca using SOM portraits.

Wirth H, von Bergen M, Murugaiyan J, Rösler U, Stokowy T, Binder H.

J Microbiol Methods. 2012 Jan;88(1):83-97. doi: 10.1016/j.mimet.2011.10.013. Epub 2011 Oct 26.

PMID:
22062088
[PubMed - indexed for MEDLINE]
13.

A robust approach based on Weibull distribution for clustering gene expression data.

Wang H, Wang Z, Li X, Gong B, Feng L, Zhou Y.

Algorithms Mol Biol. 2011 May 31;6(1):14. doi: 10.1186/1748-7188-6-14.

PMID:
21624141
[PubMed]
Free PMC Article
14.

Methodology and software to detect viral integration site hot-spots.

Presson AP, Kim N, Xiaofei Y, Chen IS, Kim S.

BMC Bioinformatics. 2011 Sep 14;12:367. doi: 10.1186/1471-2105-12-367.

PMID:
21914224
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

An unsupervised hierarchical dynamic self-organizing approach to cancer class discovery and marker gene identification in microarray data.

Hsu AL, Tang SL, Halgamuge SK.

Bioinformatics. 2003 Nov 1;19(16):2131-40.

PMID:
14594719
[PubMed - indexed for MEDLINE]
Free Article
16.

Gene set internal coherence in the context of functional profiling.

Montaner D, Minguez P, Al-Shahrour F, Dopazo J.

BMC Genomics. 2009 Apr 27;10:197. doi: 10.1186/1471-2164-10-197.

PMID:
19397819
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Simultaneous gene clustering and subset selection for sample classification via MDL.

Jörnsten R, Yu B.

Bioinformatics. 2003 Jun 12;19(9):1100-9.

PMID:
12801870
[PubMed - indexed for MEDLINE]
Free Article
18.

Including probe-level measurement error in robust mixture clustering of replicated microarray gene expression.

Liu X, Rattray M.

Stat Appl Genet Mol Biol. 2010;9:Article42. doi: 10.2202/1544-6115.1600. Epub 2010 Dec 9.

PMID:
21194414
[PubMed - indexed for MEDLINE]
19.

CLEAN: CLustering Enrichment ANalysis.

Freudenberg JM, Joshi VK, Hu Z, Medvedovic M.

BMC Bioinformatics. 2009 Jul 29;10:234. doi: 10.1186/1471-2105-10-234.

PMID:
19640299
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Estimating the number of clusters in multivariate data by self-organizing maps.

Costa JA, Netto ML.

Int J Neural Syst. 1999 Jun;9(3):195-202.

PMID:
10560758
[PubMed - indexed for MEDLINE]

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