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Results: 1 to 20 of 111

1.

Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation.

Giloteaux L, Holmes DE, Williams KH, Wrighton KC, Wilkins MJ, Montgomery AP, Smith JA, Orellana R, Thompson CA, Roper TJ, Long PE, Lovley DR.

ISME J. 2013 Feb;7(2):370-83. doi: 10.1038/ismej.2012.109. Epub 2012 Oct 4.

PMID:
23038171
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater.

Mouser PJ, N'Guessan AL, Elifantz H, Holmes DE, Williams KH, Wilkins MJ, Long PE, Lovley DR.

Environ Sci Technol. 2009 Jun 15;43(12):4386-92.

PMID:
19603651
[PubMed - indexed for MEDLINE]
3.

Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.

Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR.

ISME J. 2011 Feb;5(2):305-16. doi: 10.1038/ismej.2010.117. Epub 2010 Jul 29.

PMID:
20668487
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation.

Mouser PJ, Holmes DE, Perpetua LA, DiDonato R, Postier B, Liu A, Lovley DR.

ISME J. 2009 Apr;3(4):454-65. doi: 10.1038/ismej.2008.126. Epub 2009 Jan 8.

PMID:
19129865
[PubMed - indexed for MEDLINE]
5.

Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater.

Holmes DE, Giloteaux L, Williams KH, Wrighton KC, Wilkins MJ, Thompson CA, Roper TJ, Long PE, Lovley DR.

ISME J. 2013 Jul;7(7):1286-98. doi: 10.1038/ismej.2013.20. Epub 2013 Feb 28.

PMID:
23446832
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Molecular analysis of the in situ growth rates of subsurface Geobacter species.

Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR.

Appl Environ Microbiol. 2013 Mar;79(5):1646-53. doi: 10.1128/AEM.03263-12. Epub 2012 Dec 28.

PMID:
23275510
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.

Scheibe TD, Mahadevan R, Fang Y, Garg S, Long PE, Lovley DR.

Microb Biotechnol. 2009 Mar;2(2):274-86. doi: 10.1111/j.1751-7915.2009.00087.x.

PMID:
21261921
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.

Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP, Chavan MA, Johnson JP, Long PE, Lovley DR.

ISME J. 2007 Dec;1(8):663-77. Epub 2007 Oct 18.

PMID:
18059491
[PubMed - indexed for MEDLINE]
9.

Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.

Holmes DE, O'Neil RA, Chavan MA, N'Guessan LA, Vrionis HA, Perpetua LA, Larrahondo MJ, DiDonato R, Liu A, Lovley DR.

ISME J. 2009 Feb;3(2):216-30. doi: 10.1038/ismej.2008.89. Epub 2008 Oct 9.

PMID:
18843300
[PubMed - indexed for MEDLINE]
10.

Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation.

Risso C, Methé BA, Elifantz H, Holmes DE, Lovley DR.

Microbiology. 2008 Sep;154(Pt 9):2589-99. doi: 10.1099/mic.0.2008/017244-0.

PMID:
18757793
[PubMed - indexed for MEDLINE]
Free Article
11.

Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer.

N'Guessan AL, Elifantz H, Nevin KP, Mouser PJ, Methé B, Woodard TL, Manley K, Williams KH, Wilkins MJ, Larsen JT, Long PE, Lovley DR.

ISME J. 2010 Feb;4(2):253-66. doi: 10.1038/ismej.2009.115. Epub 2009 Dec 10.

PMID:
20010635
[PubMed - indexed for MEDLINE]
12.

Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.

O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo MJ, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'Guessan AL, Lovley DR.

Environ Microbiol. 2008 May;10(5):1218-30. doi: 10.1111/j.1462-2920.2007.01537.x. Epub 2008 Feb 12.

PMID:
18279349
[PubMed - indexed for MEDLINE]
13.

Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.

Elifantz H, N'Guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR.

FEMS Microbiol Ecol. 2010 Sep;73(3):441-9. doi: 10.1111/j.1574-6941.2010.00907.x. Epub 2010 May 10.

PMID:
20533942
[PubMed - indexed for MEDLINE]
14.

Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer.

Anderson RT, Vrionis HA, Ortiz-Bernad I, Resch CT, Long PE, Dayvault R, Karp K, Marutzky S, Metzler DR, Peacock A, White DC, Lowe M, Lovley DR.

Appl Environ Microbiol. 2003 Oct;69(10):5884-91.

PMID:
14532040
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.

Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo MJ, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR.

Microbiology. 2008 May;154(Pt 5):1422-35. doi: 10.1099/mic.0.2007/014365-0.

PMID:
18451051
[PubMed - indexed for MEDLINE]
Free Article
16.

Arsenic dissolution from Japanese paddy soil by a dissimilatory arsenate-reducing bacterium Geobacter sp. OR-1.

Ohtsuka T, Yamaguchi N, Makino T, Sakurai K, Kimura K, Kudo K, Homma E, Dong DT, Amachi S.

Environ Sci Technol. 2013 Jun 18;47(12):6263-71. doi: 10.1021/es400231x. Epub 2013 May 28.

PMID:
23668621
[PubMed - indexed for MEDLINE]
17.

Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI).

Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, Lovley DR, Long PE, Lipton MS.

Microb Biotechnol. 2011 Jan;4(1):55-63. doi: 10.1111/j.1751-7915.2010.00194.x.

PMID:
21255372
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Evidence of Geobacter-associated phage in a uranium-contaminated aquifer.

Holmes DE, Giloteaux L, Chaurasia AK, Williams KH, Luef B, Wilkins MJ, Wrighton KC, Thompson CA, Comolli LR, Lovley DR.

ISME J. 2014 Aug 1. doi: 10.1038/ismej.2014.128. [Epub ahead of print]

PMID:
25083935
[PubMed - as supplied by publisher]
19.

Monitoring the metabolic status of geobacter species in contaminated groundwater by quantifying key metabolic proteins with Geobacter-specific antibodies.

Yun J, Ueki T, Miletto M, Lovley DR.

Appl Environ Microbiol. 2011 Jul;77(13):4597-602. doi: 10.1128/AEM.00114-11. Epub 2011 May 6.

PMID:
21551286
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Detection and quantification of Geobacter lovleyi strain SZ: implications for bioremediation at tetrachloroethene- and uranium-impacted sites.

Amos BK, Sung Y, Fletcher KE, Gentry TJ, Wu WM, Criddle CS, Zhou J, Löffler FE.

Appl Environ Microbiol. 2007 Nov;73(21):6898-904. Epub 2007 Sep 7.

PMID:
17827319
[PubMed - indexed for MEDLINE]
Free PMC Article

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