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Results: 1 to 20 of 99

1.

Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling.

Boyle P, Clement K, Gu H, Smith ZD, Ziller M, Fostel JL, Holmes L, Meldrim J, Kelley F, Gnirke A, Meissner A.

Genome Biol. 2012 Oct 3;13(10):R92. doi: 10.1186/gb-2012-13-10-r92.

PMID:
23034176
[PubMed - in process]
Free PMC Article
2.

Double restriction-enzyme digestion improves the coverage and accuracy of genome-wide CpG methylation profiling by reduced representation bisulfite sequencing.

Wang J, Xia Y, Li L, Gong D, Yao Y, Luo H, Lu H, Yi N, Wu H, Zhang X, Tao Q, Gao F.

BMC Genomics. 2013 Jan 16;14:11. doi: 10.1186/1471-2164-14-11.

PMID:
23324053
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Systematic assessment of reduced representation bisulfite sequencing to human blood samples: A promising method for large-sample-scale epigenomic studies.

Wang L, Sun J, Wu H, Liu S, Wang J, Wu B, Huang S, Li N, Wang J, Zhang X.

J Biotechnol. 2012 Jan;157(1):1-6. doi: 10.1016/j.jbiotec.2011.06.034. Epub 2011 Jul 6.

PMID:
21763364
[PubMed - indexed for MEDLINE]
4.

Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling.

Gu H, Smith ZD, Bock C, Boyle P, Gnirke A, Meissner A.

Nat Protoc. 2011 Apr;6(4):468-81. doi: 10.1038/nprot.2010.190. Epub 2011 Mar 18.

PMID:
21412275
[PubMed - indexed for MEDLINE]
5.

Technical considerations for reduced representation bisulfite sequencing with multiplexed libraries.

Chatterjee A, Rodger EJ, Stockwell PA, Weeks RJ, Morison IM.

J Biomed Biotechnol. 2012;2012:741542. doi: 10.1155/2012/741542. Epub 2012 Oct 10.

PMID:
23193365
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Improved reduced representation bisulfite sequencing for epigenomic profiling of clinical samples.

Lee YK, Jin S, Duan S, Lim YC, Ng DP, Lin XM, Yeo GSh, Ding C.

Biol Proced Online. 2014 Jan 9;16(1):1. doi: 10.1186/1480-9222-16-1.

PMID:
24406024
[PubMed]
Free PMC Article
7.

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods.

Stevens M, Cheng JB, Li D, Xie M, Hong C, Maire CL, Ligon KL, Hirst M, Marra MA, Costello JF, Wang T.

Genome Res. 2013 Sep;23(9):1541-53. doi: 10.1101/gr.152231.112. Epub 2013 Jun 26.

PMID:
23804401
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

High-throughput bisulfite sequencing in mammalian genomes.

Smith ZD, Gu H, Bock C, Gnirke A, Meissner A.

Methods. 2009 Jul;48(3):226-32. doi: 10.1016/j.ymeth.2009.05.003. Epub 2009 May 12.

PMID:
19442738
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

RRBS-analyser: a comprehensive web server for reduced representation bisulfite sequencing data analysis.

Wang T, Liu Q, Li X, Wang X, Li J, Zhu X, Sun ZS, Wu J.

Hum Mutat. 2013 Dec;34(12):1606-10. doi: 10.1002/humu.22444. Epub 2013 Oct 10.

PMID:
24106010
[PubMed - indexed for MEDLINE]
10.

Genome-wide analysis of DNA methylation in low cell numbers by reduced representation bisulfite sequencing.

Smallwood SA, Kelsey G.

Methods Mol Biol. 2012;925:187-97. doi: 10.1007/978-1-62703-011-3_12.

PMID:
22907498
[PubMed - indexed for MEDLINE]
11.

Mapping the zebrafish brain methylome using reduced representation bisulfite sequencing.

Chatterjee A, Ozaki Y, Stockwell PA, Horsfield JA, Morison IM, Nakagawa S.

Epigenetics. 2013 Sep;8(9):979-89. doi: 10.4161/epi.25797. Epub 2013 Jul 24.

PMID:
23975027
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis.

Meissner A, Gnirke A, Bell GW, Ramsahoye B, Lander ES, Jaenisch R.

Nucleic Acids Res. 2005 Oct 13;33(18):5868-77. Print 2005.

PMID:
16224102
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Reduced representation bisulfite sequencing to identify global alteration of DNA methylation.

Nagarajan A, Roden C, Wajapeyee N.

Methods Mol Biol. 2014;1176:23-31. doi: 10.1007/978-1-4939-0992-6_3.

PMID:
25030916
[PubMed - in process]
14.

Bisulfite Patch PCR enables multiplexed sequencing of promoter methylation across cancer samples.

Varley KE, Mitra RD.

Genome Res. 2010 Sep;20(9):1279-87. doi: 10.1101/gr.101212.109. Epub 2010 Jul 13.

PMID:
20627893
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Exploring genome wide bisulfite sequencing for DNA methylation analysis in livestock: a technical assessment.

Doherty R, Couldrey C.

Front Genet. 2014 May 13;5:126. doi: 10.3389/fgene.2014.00126. eCollection 2014.

PMID:
24860595
[PubMed]
Free PMC Article
16.

Laser capture microdissection-reduced representation bisulfite sequencing (LCM-RRBS) maps changes in DNA methylation associated with gonadectomy-induced adrenocortical neoplasia in the mouse.

Schillebeeckx M, Schrade A, Löbs AK, Pihlajoki M, Wilson DB, Mitra RD.

Nucleic Acids Res. 2013 Jun;41(11):e116. doi: 10.1093/nar/gkt230. Epub 2013 Apr 15.

PMID:
23589626
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.

Sun Z, Baheti S, Middha S, Kanwar R, Zhang Y, Li X, Beutler AS, Klee E, Asmann YW, Thompson EA, Kocher JP.

Bioinformatics. 2012 Aug 15;28(16):2180-1. doi: 10.1093/bioinformatics/bts337. Epub 2012 Jun 10.

PMID:
22689387
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Modeling, simulation and analysis of methylation profiles from reduced representation bisulfite sequencing experiments.

Lacey MR, Baribault C, Ehrlich M.

Stat Appl Genet Mol Biol. 2013 Dec;12(6):723-42. doi: 10.1515/sagmb-2013-0027.

PMID:
24163200
[PubMed - indexed for MEDLINE]
19.

CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data.

Su J, Yan H, Wei Y, Liu H, Liu H, Wang F, Lv J, Wu Q, Zhang Y.

Nucleic Acids Res. 2013 Jan 7;41(1):e4. doi: 10.1093/nar/gks829. Epub 2012 Aug 31.

PMID:
22941633
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Profiling DNA methylation from small amounts of genomic DNA starting material: efficient sodium bisulfite conversion and subsequent whole-genome amplification.

Mill J, Petronis A.

Methods Mol Biol. 2009;507:371-81. doi: 10.1007/978-1-59745-522-0_27.

PMID:
18987828
[PubMed - indexed for MEDLINE]

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