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Results: 1 to 20 of 109

Similar articles for PubMed (Select 23034089)

1.

EpiExplorer: live exploration and global analysis of large epigenomic datasets.

Halachev K, Bast H, Albrecht F, Lengauer T, Bock C.

Genome Biol. 2012 Oct 3;13(10):R96. doi: 10.1186/gb-2012-13-10-r96.

2.

methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser.

Zhou X, Li D, Lowdon RF, Costello JF, Wang T.

Bioinformatics. 2014 Aug 1;30(15):2206-7. doi: 10.1093/bioinformatics/btu191. Epub 2014 Apr 10.

PMID:
24728854
3.

Mapping human epigenomes.

Rivera CM, Ren B.

Cell. 2013 Sep 26;155(1):39-55. doi: 10.1016/j.cell.2013.09.011. Review.

4.

Analyzing epigenome data in context of genome evolution and human diseases.

Feuerbach L, Halachev K, Assenov Y, Müller F, Bock C, Lengauer T.

Methods Mol Biol. 2012;856:431-67. doi: 10.1007/978-1-61779-585-5_18.

PMID:
22399470
5.

Web-based analysis of (Epi-) genome data using EpiGRAPH and Galaxy.

Bock C, Von Kuster G, Halachev K, Taylor J, Nekrutenko A, Lengauer T.

Methods Mol Biol. 2010;628:275-96. doi: 10.1007/978-1-60327-367-1_15.

PMID:
20238087
6.

Surveying the epigenomic landscape, one base at a time.

Zentner GE, Henikoff S.

Genome Biol. 2012 Oct 22;13(10):250. doi: 10.1186/gb4051. Review.

7.

Introduction into the analysis of high-throughput-sequencing based epigenome data.

Huss M.

Brief Bioinform. 2010 Sep;11(5):512-23. doi: 10.1093/bib/bbq014. Epub 2010 May 10. Review.

8.

Understanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions.

Chen CC, Xiao S, Xie D, Cao X, Song CX, Wang T, He C, Zhong S.

PLoS Comput Biol. 2013;9(12):e1003367. doi: 10.1371/journal.pcbi.1003367. Epub 2013 Dec 5.

9.

Enabling interspecies epigenomic comparison with CEpBrowser.

Cao X, Zhong S.

Bioinformatics. 2013 May 1;29(9):1223-5. doi: 10.1093/bioinformatics/btt114. Epub 2013 Mar 29.

10.

A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics.

Song Q, Decato B, Hong EE, Zhou M, Fang F, Qu J, Garvin T, Kessler M, Zhou J, Smith AD.

PLoS One. 2013 Dec 6;8(12):e81148. doi: 10.1371/journal.pone.0081148. eCollection 2013.

11.

Analysis of interactions between the epigenome and structural mutability of the genome using Genboree Workbench tools.

Coarfa C, Pichot C, Jackson A, Tandon A, Amin V, Raghuraman S, Paithankar S, Lee AV, McGuire SE, Milosavljevic A.

BMC Bioinformatics. 2014;15 Suppl 7:S2. doi: 10.1186/1471-2105-15-S7-S2. Epub 2014 May 28.

12.

An integrated workflow for DNA methylation analysis.

Li P, Demirci F, Mahalingam G, Demirci C, Nakano M, Meyers BC.

J Genet Genomics. 2013 May 20;40(5):249-60. doi: 10.1016/j.jgg.2013.03.010. Epub 2013 Mar 30. Review.

PMID:
23706300
13.

The NIH Roadmap Epigenomics Program data resource.

Chadwick LH.

Epigenomics. 2012 Jun;4(3):317-24. doi: 10.2217/epi.12.18.

14.

Detection of cancer-specific epigenomic changes in biofluids: powerful tools in biomarker discovery and application.

Nogueira da Costa A, Herceg Z.

Mol Oncol. 2012 Dec;6(6):704-15. doi: 10.1016/j.molonc.2012.07.005. Epub 2012 Aug 16. Review.

15.

The USC Epigenome Center.

Laird PW.

Epigenomics. 2009 Oct;1(1):29-31. doi: 10.2217/epi.09.12.

16.

EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data.

Bock C, Halachev K, Büch J, Lengauer T.

Genome Biol. 2009 Feb 10;10(2):R14. doi: 10.1186/gb-2009-10-2-r14.

17.

Single-molecule, genome-scale analyses of DNA modifications: exposing the epigenome with next-generation technologies.

Zillner K, Németh A.

Epigenomics. 2012 Aug;4(4):403-14. doi: 10.2217/epi.12.30. Review.

PMID:
22920180
18.

Studying the epigenome using next generation sequencing.

Ku CS, Naidoo N, Wu M, Soong R.

J Med Genet. 2011 Nov;48(11):721-30. doi: 10.1136/jmedgenet-2011-100242. Epub 2011 Aug 8. Review.

PMID:
21825079
19.

CHANCE: comprehensive software for quality control and validation of ChIP-seq data.

Diaz A, Nellore A, Song JS.

Genome Biol. 2012 Oct 15;13(10):R98. doi: 10.1186/gb-2012-13-10-r98.

20.

Capturing the dynamic epigenome.

Deal RB, Henikoff S.

Genome Biol. 2010;11(10):218. doi: 10.1186/gb-2010-11-10-218. Epub 2010 Oct 8. Review.

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