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Results: 1 to 20 of 99

1.

Transcriptome tomography for brain analysis in the web-accessible anatomical space.

Okamura-Oho Y, Shimokawa K, Takemoto S, Hirakiyama A, Nakamura S, Tsujimura Y, Nishimura M, Kasukawa T, Masumoto KH, Nikaido I, Shigeyoshi Y, Ueda HR, Song G, Gee J, Himeno R, Yokota H.

PLoS One. 2012;7(9):e45373. doi: 10.1371/journal.pone.0045373. Epub 2012 Sep 19.

PMID:
23028969
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Neuroinformatics for genome-wide 3D gene expression mapping in the mouse brain.

Ng L, Pathak SD, Kuan C, Lau C, Dong H, Sodt A, Dang C, Avants B, Yushkevich P, Gee JC, Haynor D, Lein E, Jones A, Hawrylycz M.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jul-Sep;4(3):382-93.

PMID:
17666758
[PubMed - indexed for MEDLINE]
3.

An anatomic gene expression atlas of the adult mouse brain.

Ng L, Bernard A, Lau C, Overly CC, Dong HW, Kuan C, Pathak S, Sunkin SM, Dang C, Bohland JW, Bokil H, Mitra PP, Puelles L, Hohmann J, Anderson DJ, Lein ES, Jones AR, Hawrylycz M.

Nat Neurosci. 2009 Mar;12(3):356-62. doi: 10.1038/nn.2281. Epub 2009 Feb 15.

PMID:
19219037
[PubMed - indexed for MEDLINE]
4.

Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain.

Lau C, Ng L, Thompson C, Pathak S, Kuan L, Jones A, Hawrylycz M.

BMC Bioinformatics. 2008 Mar 18;9:153. doi: 10.1186/1471-2105-9-153.

PMID:
18366675
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Insights from spatially mapped gene expression in the mouse brain.

Sunkin SM, Hohmann JG.

Hum Mol Genet. 2007 Oct 15;16 Spec No. 2:R209-19. Review.

PMID:
17911164
[PubMed - indexed for MEDLINE]
Free Article
6.

An anatomically comprehensive atlas of the adult human brain transcriptome.

Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, van de Lagemaat LN, Smith KA, Ebbert A, Riley ZL, Abajian C, Beckmann CF, Bernard A, Bertagnolli D, Boe AF, Cartagena PM, Chakravarty MM, Chapin M, Chong J, Dalley RA, Daly BD, Dang C, Datta S, Dee N, Dolbeare TA, Faber V, Feng D, Fowler DR, Goldy J, Gregor BW, Haradon Z, Haynor DR, Hohmann JG, Horvath S, Howard RE, Jeromin A, Jochim JM, Kinnunen M, Lau C, Lazarz ET, Lee C, Lemon TA, Li L, Li Y, Morris JA, Overly CC, Parker PD, Parry SE, Reding M, Royall JJ, Schulkin J, Sequeira PA, Slaughterbeck CR, Smith SC, Sodt AJ, Sunkin SM, Swanson BE, Vawter MP, Williams D, Wohnoutka P, Zielke HR, Geschwind DH, Hof PR, Smith SM, Koch C, Grant SG, Jones AR.

Nature. 2012 Sep 20;489(7416):391-9. doi: 10.1038/nature11405.

PMID:
22996553
[PubMed - indexed for MEDLINE]
7.

Cerebellar development transcriptome database (CDT-DB): profiling of spatio-temporal gene expression during the postnatal development of mouse cerebellum.

Sato A, Sekine Y, Saruta C, Nishibe H, Morita N, Sato Y, Sadakata T, Shinoda Y, Kojima T, Furuichi T.

Neural Netw. 2008 Oct;21(8):1056-69. doi: 10.1016/j.neunet.2008.05.004. Epub 2008 Jun 4.

PMID:
18603407
[PubMed - indexed for MEDLINE]
8.

Anatomical and gene expression mapping of the ventral pallium in a three-dimensional model of developing human brain.

Lindsay S, Sarma S, Martínez-de-la-Torre M, Kerwin J, Scott M, Luis Ferran J, Baldock R, Puelles L.

Neuroscience. 2005;136(3):625-32.

PMID:
16344140
[PubMed - indexed for MEDLINE]
9.

Surface-based mapping of gene expression and probabilistic expression maps in the mouse cortex.

Ng L, Lau C, Sunkin SM, Bernard A, Chakravarty MM, Lein ES, Jones AR, Hawrylycz M.

Methods. 2010 Feb;50(2):55-62. doi: 10.1016/j.ymeth.2009.10.001. Epub 2009 Oct 8.

PMID:
19818854
[PubMed - indexed for MEDLINE]
10.

Common atlas format and 3D brain atlas reconstructor: infrastructure for constructing 3D brain atlases.

Majka P, Kublik E, Furga G, Wójcik DK.

Neuroinformatics. 2012 Apr;10(2):181-97. doi: 10.1007/s12021-011-9138-6.

PMID:
22227717
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A symmetrical Waxholm canonical mouse brain for NeuroMaps.

Bowden DM, Johnson GA, Zaborsky L, Green WD, Moore E, Badea A, Dubach MF, Bookstein FL.

J Neurosci Methods. 2011 Feb 15;195(2):170-5. doi: 10.1016/j.jneumeth.2010.11.028. Epub 2010 Dec 14.

PMID:
21163300
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A high-resolution anatomical framework of the neonatal mouse brain for managing gene expression data.

Lee EF, Boline J, Toga AW.

Front Neuroinform. 2007 Nov 2;1:6. doi: 10.3389/neuro.11.006.2007. eCollection 2007.

PMID:
18974801
[PubMed]
Free PMC Article
13.

A high-resolution anatomical atlas of the transcriptome in the mouse embryo.

Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M, Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E, Mehmeti S, Dagand E, Schrinner S, Nürnberger A, Schmidt K, Metz K, Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S, Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN, Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S, Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P, Reymond A, Davidson DR, Dollé P, Antonarakis SE, Yaspo ML, Martinez S, Baldock RA, Eichele G, Ballabio A.

PLoS Biol. 2011 Jan 18;9(1):e1000582. doi: 10.1371/journal.pbio.1000582.

PMID:
21267068
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

EMAGE mouse embryo spatial gene expression database: 2014 update.

Richardson L, Venkataraman S, Stevenson P, Yang Y, Moss J, Graham L, Burton N, Hill B, Rao J, Baldock RA, Armit C.

Nucleic Acids Res. 2014 Jan;42(Database issue):D835-44. doi: 10.1093/nar/gkt1155. Epub 2013 Nov 21.

PMID:
24265223
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources.

Lenzi L, Facchin F, Piva F, Giulietti M, Pelleri MC, Frabetti F, Vitale L, Casadei R, Canaider S, Bortoluzzi S, Coppe A, Danieli GA, Principato G, Ferrari S, Strippoli P.

BMC Genomics. 2011 Feb 18;12:121. doi: 10.1186/1471-2164-12-121.

PMID:
21333005
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis.

Zhang F, Drabier R.

BMC Bioinformatics. 2012;13 Suppl 15:S7. doi: 10.1186/1471-2105-13-S15-S7. Epub 2012 Sep 11.

PMID:
23046449
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Integrating human and murine anatomical gene expression data for improved comparisons.

Jiménez-Lozano N, Segura J, Macías JR, Vega J, Carazo JM.

Bioinformatics. 2012 Feb 1;28(3):397-402. doi: 10.1093/bioinformatics/btr639. Epub 2011 Nov 20.

PMID:
22106336
[PubMed - indexed for MEDLINE]
Free Article
18.

A genome-scale map of expression for a mouse brain section obtained using voxelation.

Chin MH, Geng AB, Khan AH, Qian WJ, Petyuk VA, Boline J, Levy S, Toga AW, Smith RD, Leahy RM, Smith DJ.

Physiol Genomics. 2007 Aug 20;30(3):313-21. Epub 2007 May 15.

PMID:
17504947
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Quantitative assessment of transcriptome differences between brain territories.

de Chaldée M, Gaillard MC, Bizat N, Buhler JM, Manzoni O, Bockaert J, Hantraye P, Brouillet E, Elalouf JM.

Genome Res. 2003 Jul;13(7):1646-53.

PMID:
12840043
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

From spatial-data to 3D models of the developing human brain.

Wang X, Lindsay S, Baldock R.

Methods. 2010 Feb;50(2):96-104. doi: 10.1016/j.ymeth.2009.09.006. Epub 2009 Oct 1.

PMID:
19800406
[PubMed - indexed for MEDLINE]

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