Similar articles for PMID: 23024010

Year	Number of Results
2009	1
2010	1
2011	7
2012	9
2013	8
2014	18
2015	24
2016	13
2017	26
2018	17
2019	3
2020	3
2021	2
2022	4
2024	0

1

Site identification in high-throughput RNA-protein interaction data.

Uren PJ, Bahrami-Samani E, Burns SC, Qiao M, Karginov FV, Hodges E, Hannon GJ, Sanford JR, Penalva LO, Smith AD. Uren PJ, et al. Bioinformatics. 2012 Dec 1;28(23):3013-20. doi: 10.1093/bioinformatics/bts569. Epub 2012 Sep 28. Bioinformatics. 2012. PMID: 23024010 Free PMC article.

2

dCLIP: a computational approach for comparative CLIP-seq analyses.

Wang T, Xie Y, Xiao G. Wang T, et al. Genome Biol. 2014 Jan 7;15(1):R11. doi: 10.1186/gb-2014-15-1-r11. Genome Biol. 2014. PMID: 24398258 Free PMC article.

3

omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data.

Drewe-Boss P, Wessels HH, Ohler U. Drewe-Boss P, et al. Genome Biol. 2018 Nov 1;19(1):183. doi: 10.1186/s13059-018-1521-2. Genome Biol. 2018. PMID: 30384847 Free PMC article.

4

piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.

Han BW, Wang W, Zamore PD, Weng Z. Han BW, et al. Bioinformatics. 2015 Feb 15;31(4):593-5. doi: 10.1093/bioinformatics/btu647. Epub 2014 Oct 17. Bioinformatics. 2015. PMID: 25342065 Free PMC article.

5

rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data.

Shi Y, Chinnaiyan AM, Jiang H. Shi Y, et al. Bioinformatics. 2015 Jul 1;31(13):2222-4. doi: 10.1093/bioinformatics/btv119. Epub 2015 Feb 24. Bioinformatics. 2015. PMID: 25717189 Free PMC article.

6

CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data.

Shah A, Qian Y, Weyn-Vanhentenryck SM, Zhang C. Shah A, et al. Bioinformatics. 2017 Feb 15;33(4):566-567. doi: 10.1093/bioinformatics/btw653. Bioinformatics. 2017. PMID: 27797762 Free PMC article.

7

Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.

Budak G, Srivastava R, Janga SC. Budak G, et al. RNA. 2017 Jun;23(6):836-846. doi: 10.1261/rna.059089.116. Epub 2017 Mar 23. RNA. 2017. PMID: 28336542 Free PMC article.

8

DO-RIP-seq to quantify RNA binding sites transcriptome-wide.

Nicholson CO, Friedersdorf MB, Bisogno LS, Keene JD. Nicholson CO, et al. Methods. 2017 Apr 15;118-119:16-23. doi: 10.1016/j.ymeth.2016.11.004. Epub 2016 Nov 10. Methods. 2017. PMID: 27840290 Free PMC article.

9

PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis.

Chen B, Yun J, Kim MS, Mendell JT, Xie Y. Chen B, et al. Genome Biol. 2014 Jan 22;15(1):R18. doi: 10.1186/gb-2014-15-1-r18. Genome Biol. 2014. PMID: 24451213 Free PMC article.

10

SimSeq: a nonparametric approach to simulation of RNA-sequence datasets.

Benidt S, Nettleton D. Benidt S, et al. Bioinformatics. 2015 Jul 1;31(13):2131-40. doi: 10.1093/bioinformatics/btv124. Epub 2015 Feb 26. Bioinformatics. 2015. PMID: 25725090 Free PMC article.

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