Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 105

1.

ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins.

Tempel S, Pollet N, Tahi F.

BMC Bioinformatics. 2012 Sep 25;13:246. doi: 10.1186/1471-2105-13-246.

PMID:
23009561
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

microPred: effective classification of pre-miRNAs for human miRNA gene prediction.

Batuwita R, Palade V.

Bioinformatics. 2009 Apr 15;25(8):989-95. doi: 10.1093/bioinformatics/btp107. Epub 2009 Feb 20.

PMID:
19233894
[PubMed - indexed for MEDLINE]
Free Article
3.

Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data.

Ragan C, Mowry BJ, Bauer DC.

Nucleic Acids Res. 2012 Sep;40(16):7633-43. doi: 10.1093/nar/gks505. Epub 2012 Jun 16.

PMID:
22705792
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A fast ab-initio method for predicting miRNA precursors in genomes.

Tempel S, Tahi F.

Nucleic Acids Res. 2012 Jun;40(11):e80. doi: 10.1093/nar/gks146. Epub 2012 Feb 22.

PMID:
22362754
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans.

Huang TH, Fan B, Rothschild MF, Hu ZL, Li K, Zhao SH.

BMC Bioinformatics. 2007 Sep 17;8:341.

PMID:
17868480
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Evidence for small RNAs homologous to effector-encoding genes and transposable elements in the oomycete Phytophthora infestans.

Vetukuri RR, Åsman AK, Tellgren-Roth C, Jahan SN, Reimegård J, Fogelqvist J, Savenkov E, Söderbom F, Avrova AO, Whisson SC, Dixelius C.

PLoS One. 2012;7(12):e51399. doi: 10.1371/journal.pone.0051399. Epub 2012 Dec 14.

PMID:
23272103
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A framework for automated enrichment of functionally significant inverted repeats in whole genomes.

Kandoth C, Ercal F, Frank RL.

BMC Bioinformatics. 2010 Oct 7;11 Suppl 6:S20. doi: 10.1186/1471-2105-11-S6-S20.

PMID:
20946604
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome.

Pantano L, Estivill X, Martí E.

Bioinformatics. 2011 Nov 15;27(22):3202-3. doi: 10.1093/bioinformatics/btr527. Epub 2011 Oct 5.

PMID:
21976421
[PubMed - indexed for MEDLINE]
Free Article
9.

Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation.

Meng F, Hackenberg M, Li Z, Yan J, Chen T.

PLoS One. 2012;7(3):e34394. doi: 10.1371/journal.pone.0034394. Epub 2012 Mar 28.

PMID:
22470567
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL.

Lucas SJ, Budak H.

PLoS One. 2012;7(7):e40859. doi: 10.1371/journal.pone.0040859. Epub 2012 Jul 17.

PMID:
22815845
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine.

Xue C, Li F, He T, Liu GP, Li Y, Zhang X.

BMC Bioinformatics. 2005 Dec 29;6:310.

PMID:
16381612
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genetic algorithm-based efficient feature selection for classification of pre-miRNAs.

Xuan P, Guo MZ, Wang J, Wang CY, Liu XY, Liu Y.

Genet Mol Res. 2011 Apr 12;10(2):588-603. doi: 10.4238/vol10-2gmr969.

PMID:
21491369
[PubMed - indexed for MEDLINE]
Free Article
13.

De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures.

Ng KL, Mishra SK.

Bioinformatics. 2007 Jun 1;23(11):1321-30. Epub 2007 Jan 31.

PMID:
17267435
[PubMed - indexed for MEDLINE]
Free Article
14.

PlantMiRNAPred: efficient classification of real and pseudo plant pre-miRNAs.

Xuan P, Guo M, Liu X, Huang Y, Li W, Huang Y.

Bioinformatics. 2011 May 15;27(10):1368-76. doi: 10.1093/bioinformatics/btr153. Epub 2011 Mar 26.

PMID:
21441575
[PubMed - indexed for MEDLINE]
Free Article
15.

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades.

Friedländer MR, Mackowiak SD, Li N, Chen W, Rajewsky N.

Nucleic Acids Res. 2012 Jan;40(1):37-52. doi: 10.1093/nar/gkr688. Epub 2011 Sep 12.

PMID:
21911355
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A family of human microRNA genes from miniature inverted-repeat transposable elements.

Piriyapongsa J, Jordan IK.

PLoS One. 2007 Feb 14;2(2):e203.

PMID:
17301878
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Benchmark comparison of ab initio microRNA identification methods and software.

Hu LL, Huang Y, Wang QC, Zou Q, Jiang Y.

Genet Mol Res. 2012 Dec 19;11(4):4525-38. doi: 10.4238/2012.October.17.4.

PMID:
23096922
[PubMed - indexed for MEDLINE]
Free Article
18.

MicroRNA genes derived from repetitive elements and expanded by segmental duplication events in mammalian genomes.

Yuan Z, Sun X, Liu H, Xie J.

PLoS One. 2011 Mar 16;6(3):e17666. doi: 10.1371/journal.pone.0017666.

PMID:
21436881
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata.

Krishna S, Nair A, Cheedipudi S, Poduval D, Dhawan J, Palakodeti D, Ghanekar Y.

Nucleic Acids Res. 2013 Jan 7;41(1):599-616. doi: 10.1093/nar/gks1020. Epub 2012 Nov 19.

PMID:
23166307
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Global profiling of miRNAs and the hairpin precursors: insights into miRNA processing and novel miRNA discovery.

Li N, You X, Chen T, Mackowiak SD, Friedländer MR, Weigt M, Du H, Gogol-Döring A, Chang Z, Dieterich C, Hu Y, Chen W.

Nucleic Acids Res. 2013 Apr 1;41(6):3619-34. doi: 10.1093/nar/gkt072. Epub 2013 Feb 8.

PMID:
23396444
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk