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Results: 1 to 20 of 115

Similar articles for PubMed (Select 22962457)

1.

Uncovering the co-evolutionary network among prokaryotic genes.

Cohen O, Ashkenazy H, Burstein D, Pupko T.

Bioinformatics. 2012 Sep 15;28(18):i389-i394. doi: 10.1093/bioinformatics/bts396.

3.

Microbial genotype-phenotype mapping by class association rule mining.

Tamura M, D'haeseleer P.

Bioinformatics. 2008 Jul 1;24(13):1523-9. doi: 10.1093/bioinformatics/btn210. Epub 2008 May 8.

4.

Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer.

Wolf YI, Makarova KS, Yutin N, Koonin EV.

Biol Direct. 2012 Dec 14;7:46. doi: 10.1186/1745-6150-7-46.

5.

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.

Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV.

Biol Direct. 2007 Nov 27;2:33.

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7.

Reconstructing histories of complex gene clusters on a phylogeny.

Vinar T, Brejová B, Song G, Siepel A.

J Comput Biol. 2010 Sep;17(9):1267-79. doi: 10.1089/cmb.2010.0090.

PMID:
20874408
8.

A gene family encoding RING finger proteins in rice: their expansion, expression diversity, and co-expressed genes.

Lim SD, Yim WC, Moon JC, Kim DS, Lee BM, Jang CS.

Plant Mol Biol. 2010 Mar;72(4-5):369-80. doi: 10.1007/s11103-009-9576-9. Epub 2009 Dec 3.

PMID:
19957018
9.

Genome trees constructed using five different approaches suggest new major bacterial clades.

Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

BMC Evol Biol. 2001 Oct 20;1:8.

10.
11.

Modular co-evolution of metabolic networks.

Zhao J, Ding GH, Tao L, Yu H, Yu ZH, Luo JH, Cao ZW, Li YX.

BMC Bioinformatics. 2007 Aug 27;8:311.

12.
13.

Detecting gene clusters under evolutionary constraint in a large number of genomes.

Ling X, He X, Xin D.

Bioinformatics. 2009 Mar 1;25(5):571-7. doi: 10.1093/bioinformatics/btp027. Epub 2009 Jan 21.

14.

Identification of functional links between genes using phylogenetic profiles.

Wu J, Kasif S, DeLisi C.

Bioinformatics. 2003 Aug 12;19(12):1524-30.

15.

Detecting biological network organization and functional gene orthologs.

Cui J, DeLuca TF, Jung JY, Wall DP.

Bioinformatics. 2011 Oct 15;27(20):2919-20. doi: 10.1093/bioinformatics/btr485. Epub 2011 Aug 19.

16.

Prokaryotic phylogenies inferred from whole-genome sequence and annotation data.

Du W, Cao Z, Wang Y, Sun Y, Blanzieri E, Liang Y.

Biomed Res Int. 2013;2013:409062. doi: 10.1155/2013/409062. Epub 2013 Aug 29.

17.

COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations.

Jothi R, Zotenko E, Tasneem A, Przytycka TM.

Bioinformatics. 2006 Apr 1;22(7):779-88. Epub 2006 Jan 24.

18.

Co-evolutionary networks of genes and cellular processes across fungal species.

Tuller T, Kupiec M, Ruppin E.

Genome Biol. 2009;10(5):R48. doi: 10.1186/gb-2009-10-5-r48. Epub 2009 May 5.

19.

Inference and characterization of horizontally transferred gene families using stochastic mapping.

Cohen O, Pupko T.

Mol Biol Evol. 2010 Mar;27(3):703-13. doi: 10.1093/molbev/msp240. Epub 2009 Oct 6.

20.

Evolutionary cores of domain co-occurrence networks.

Wuchty S, Almaas E.

BMC Evol Biol. 2005 Mar 23;5:24.

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