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Results: 1 to 20 of 422

1.

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigó R.

Genome Res. 2012 Sep;22(9):1775-89. doi: 10.1101/gr.132159.111.

PMID:
22955988
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

GENCODE: the reference human genome annotation for The ENCODE Project.

Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S, Barnes I, Bignell A, Boychenko V, Hunt T, Kay M, Mukherjee G, Rajan J, Despacio-Reyes G, Saunders G, Steward C, Harte R, Lin M, Howald C, Tanzer A, Derrien T, Chrast J, Walters N, Balasubramanian S, Pei B, Tress M, Rodriguez JM, Ezkurdia I, van Baren J, Brent M, Haussler D, Kellis M, Valencia A, Reymond A, Gerstein M, Guigó R, Hubbard TJ.

Genome Res. 2012 Sep;22(9):1760-74. doi: 10.1101/gr.135350.111.

PMID:
22955987
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Long noncoding RNAs are rarely translated in two human cell lines.

Bánfai B, Jia H, Khatun J, Wood E, Risk B, Gundling WE Jr, Kundaje A, Gunawardena HP, Yu Y, Xie L, Krajewski K, Strahl BD, Chen X, Bickel P, Giddings MC, Brown JB, Lipovich L.

Genome Res. 2012 Sep;22(9):1646-57. doi: 10.1101/gr.134767.111.

PMID:
22955977
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF.

Genome Res. 2012 Mar;22(3):577-91. doi: 10.1101/gr.133009.111. Epub 2011 Nov 22.

PMID:
22110045
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Integrative transcriptome analysis suggest processing of a subset of long non-coding RNAs to small RNAs.

Jalali S, Jayaraj GG, Scaria V.

Biol Direct. 2012 Aug 7;7:25. doi: 10.1186/1745-6150-7-25.

PMID:
22871084
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Computational discovery of human coding and non-coding transcripts with conserved splice sites.

Rose D, Hiller M, Schutt K, Hackermüller J, Backofen R, Stadler PF.

Bioinformatics. 2011 Jul 15;27(14):1894-900. doi: 10.1093/bioinformatics/btr314. Epub 2011 May 26.

PMID:
21622663
[PubMed - indexed for MEDLINE]
Free Article
7.

Activity-dependent human brain coding/noncoding gene regulatory networks.

Lipovich L, Dachet F, Cai J, Bagla S, Balan K, Jia H, Loeb JA.

Genetics. 2012 Nov;192(3):1133-48. doi: 10.1534/genetics.112.145128. Epub 2012 Sep 7.

PMID:
22960213
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome-wide analysis of long noncoding RNA stability.

Clark MB, Johnston RL, Inostroza-Ponta M, Fox AH, Fortini E, Moscato P, Dinger ME, Mattick JS.

Genome Res. 2012 May;22(5):885-98. doi: 10.1101/gr.131037.111. Epub 2012 Mar 9.

PMID:
22406755
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer.

Tahira AC, Kubrusly MS, Faria MF, Dazzani B, Fonseca RS, Maracaja-Coutinho V, Verjovski-Almeida S, Machado MC, Reis EM.

Mol Cancer. 2011 Nov 13;10:141. doi: 10.1186/1476-4598-10-141.

PMID:
22078386
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome-wide computational identification and manual annotation of human long noncoding RNA genes.

Jia H, Osak M, Bogu GK, Stanton LW, Johnson R, Lipovich L.

RNA. 2010 Aug;16(8):1478-87. doi: 10.1261/rna.1951310. Epub 2010 Jun 29.

PMID:
20587619
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs.

Niazi F, Valadkhan S.

RNA. 2012 Apr;18(4):825-43. doi: 10.1261/rna.029520.111. Epub 2012 Feb 23.

PMID:
22361292
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

LNCipedia: a database for annotated human lncRNA transcript sequences and structures.

Volders PJ, Helsens K, Wang X, Menten B, Martens L, Gevaert K, Vandesompele J, Mestdagh P.

Nucleic Acids Res. 2013 Jan;41(Database issue):D246-51. doi: 10.1093/nar/gks915. Epub 2012 Oct 5.

PMID:
23042674
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Long noncoding RNA in genome regulation: prospects and mechanisms.

Hung T, Chang HY.

RNA Biol. 2010 Sep-Oct;7(5):582-5. Epub 2010 Sep 1.

PMID:
20930520
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data.

Yang JH, Li JH, Jiang S, Zhou H, Qu LH.

Nucleic Acids Res. 2013 Jan;41(Database issue):D177-87. doi: 10.1093/nar/gks1060. Epub 2012 Nov 17.

PMID:
23161675
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Long noncoding RNAs in C. elegans.

Nam JW, Bartel DP.

Genome Res. 2012 Dec;22(12):2529-40. doi: 10.1101/gr.140475.112. Epub 2012 Jun 15.

PMID:
22707570
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Aberrant expression of long noncoding RNAs in autistic brain.

Ziats MN, Rennert OM.

J Mol Neurosci. 2013 Mar;49(3):589-93. doi: 10.1007/s12031-012-9880-8. Epub 2012 Sep 5.

PMID:
22949041
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Rapid turnover of long noncoding RNAs and the evolution of gene expression.

Kutter C, Watt S, Stefflova K, Wilson MD, Goncalves A, Ponting CP, Odom DT, Marques AC.

PLoS Genet. 2012;8(7):e1002841. doi: 10.1371/journal.pgen.1002841. Epub 2012 Jul 26.

PMID:
22844254
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Macro lncRNAs: a new layer of cis-regulatory information in the mammalian genome.

Guenzl PM, Barlow DP.

RNA Biol. 2012 Jun;9(6):731-41. doi: 10.4161/rna.19985. Epub 2012 May 23. Review.

PMID:
22617879
[PubMed - indexed for MEDLINE]
19.

Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study.

Sun L, Zhang Z, Bailey TL, Perkins AC, Tallack MR, Xu Z, Liu H.

BMC Bioinformatics. 2012 Dec 13;13:331. doi: 10.1186/1471-2105-13-331.

PMID:
23237380
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Global discovery of primate-specific genes in the human genome.

Tay SK, Blythe J, Lipovich L.

Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):12019-24. doi: 10.1073/pnas.0904569106. Epub 2009 Jul 6. Erratum in: Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):14180.

PMID:
19581580
[PubMed - indexed for MEDLINE]
Free PMC Article

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