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Results: 1 to 20 of 90

1.

Computational biotechnology: prediction of competitive substrate inhibition of enzymes by buffer compounds with protein-ligand docking.

Schomburg KT, Ardao I, Götz K, Rieckenberg F, Liese A, Zeng AP, Rarey M.

J Biotechnol. 2012 Nov 15;161(4):391-401. doi: 10.1016/j.jbiotec.2012.08.002. Epub 2012 Aug 20.

PMID:
22951293
[PubMed - indexed for MEDLINE]
2.

Simple, intuitive calculations of free energy of binding for protein-ligand complexes. 2. Computational titration and pH effects in molecular models of neuraminidase-inhibitor complexes.

Fornabaio M, Cozzini P, Mozzarelli A, Abraham DJ, Kellogg GE.

J Med Chem. 2003 Oct 9;46(21):4487-500.

PMID:
14521411
[PubMed - indexed for MEDLINE]
3.

Enzymes as biosensors. 2. Hysteretic response of chloroplastic fructose-1,6-bisphosphatase to fructose 2,6-bisphosphate.

Soulie JM, Riviere M, Ricard J.

Eur J Biochem. 1988 Sep 1;176(1):111-7.

PMID:
2843363
[PubMed - indexed for MEDLINE]
Free Article
4.

Effect of pH on the stability of hexokinase and glucose 6-phosphate dehydrogenase.

Souza MA, Ribeiro MZ, Silva DP, Pessoa A Jr, Vitolo M.

Appl Biochem Biotechnol. 2002 Spring;98-100:265-72.

PMID:
12018254
[PubMed - indexed for MEDLINE]
5.

Molecular docking studies of dithionitrobenzoic acid and its related compounds to protein disulfide isomerase: computational screening of inhibitors to HIV-1 entry.

Gowthaman U, Jayakanthan M, Sundar D.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S14. doi: 10.1186/1471-2105-9-S12-S14.

PMID:
19091013
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Virtual screening against highly charged active sites: identifying substrates of alpha-beta barrel enzymes.

Kalyanaraman C, Bernacki K, Jacobson MP.

Biochemistry. 2005 Feb 15;44(6):2059-71.

PMID:
15697231
[PubMed - indexed for MEDLINE]
8.

Phosphate ion partially relieves the cooperativity of effector binding in D-3-phosphoglycerate dehydrogenase without altering the cooperativity of inhibition.

Grant GA, Xu XL, Hu Z, Purvis AR.

Biochemistry. 1999 Dec 14;38(50):16548-52.

PMID:
10600116
[PubMed - indexed for MEDLINE]
10.

FURSMASA: a new approach to rapid scoring functions that uses a MD-averaged potential energy grid and a solvent-accessible surface area term with parameters GA fit to experimental data.

Pearlman DA, Rao BG, Charifson P.

Proteins. 2008 May 15;71(3):1519-38. doi: 10.1002/prot.21991.

PMID:
18300249
[PubMed - indexed for MEDLINE]
11.

Prediction of protein-ligand binding affinities using multiple instance learning.

Teramoto R, Kashima H.

J Mol Graph Model. 2010 Nov;29(3):492-7. doi: 10.1016/j.jmgm.2010.09.006. Epub 2010 Sep 29.

PMID:
20965757
[PubMed - indexed for MEDLINE]
12.

Enzymatic regulation of glycolysis and gluconeogenesis in rabbit periodontal ligament under various physiological pH conditions.

Kuwata F, Suzuki N, Otsuka K, Taguchi M, Sasai Y, Wakino H, Ito M, Ebihara S, Suzuki K.

J Nihon Univ Sch Dent. 1991 Jun;33(2):81-90.

PMID:
1658253
[PubMed - indexed for MEDLINE]
13.

[Mapping of active site of alcohol dehydrogenase with low-molecular ligands].

Kutsenko AS, Kuznetsov DA, Poroĭkov VV, Tumanian VG.

Bioorg Khim. 2000 Mar;26(3):179-86. Russian.

PMID:
10816815
[PubMed - indexed for MEDLINE]
14.
15.

ENZYME PATTERNS IN HUMAN TISSUES. 3. GLYCOLYTIC ENZYMES IN NORMAL AND MALIGNANT TISSUES OF THE COLON AND RECTUM.

SHONK CE, ARISON RN, KOVEN BJ, MAJIMA H, BOXER GE.

Cancer Res. 1965 Feb;25:206-13. No abstract available.

PMID:
14264053
[PubMed - indexed for MEDLINE]
Free Article
16.

Combining 3-D quantitative structure-activity relationship with ligand based and structure based alignment procedures for in silico screening of new hepatitis C virus NS5B polymerase inhibitors.

Musmuca I, Caroli A, Mai A, Kaushik-Basu N, Arora P, Ragno R.

J Chem Inf Model. 2010 Apr 26;50(4):662-76. doi: 10.1021/ci9004749.

PMID:
20225870
[PubMed - indexed for MEDLINE]
17.

Shared active sites of fructose-1,6-bisphosphatase. Arginine 243 mediates substrate binding and fructose 2,6-bisphosphate inhibition.

Giroux E, Williams MK, Kantrowitz ER.

J Biol Chem. 1994 Dec 16;269(50):31404-9.

PMID:
7989306
[PubMed - indexed for MEDLINE]
Free Article
18.

Maximum common binding modes (MCBM): consensus docking scoring using multiple ligand information and interaction fingerprints.

Renner S, Derksen S, Radestock S, Mörchen F.

J Chem Inf Model. 2008 Feb;48(2):319-32. doi: 10.1021/ci7003626. Epub 2008 Jan 23.

PMID:
18211051
[PubMed - indexed for MEDLINE]
19.
20.

An interaction-motif-based scoring function for protein-ligand docking.

Xie ZR, Hwang MJ.

BMC Bioinformatics. 2010 Jun 2;11:298. doi: 10.1186/1471-2105-11-298.

PMID:
20525216
[PubMed - indexed for MEDLINE]
Free PMC Article
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