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Items: 1 to 20 of 99

1.

RNA-seq transcriptome analysis of male and female zebra finch cell lines.

Balakrishnan CN, Lin YC, London SE, Clayton DF.

Genomics. 2012 Dec;100(6):363-9. doi: 10.1016/j.ygeno.2012.08.002. Epub 2012 Aug 21.

2.

Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression.

Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X.

BMC Genomics. 2012 Dec 26;13:727. doi: 10.1186/1471-2164-13-727.

3.

Sex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds.

Itoh Y, Replogle K, Kim YH, Wade J, Clayton DF, Arnold AP.

Genome Res. 2010 Apr;20(4):512-8. doi: 10.1101/gr.102343.109. Epub 2010 Mar 31.

4.

Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome.

Fraser BA, Weadick CJ, Janowitz I, Rodd FH, Hughes KA.

BMC Genomics. 2011 Apr 20;12:202. doi: 10.1186/1471-2164-12-202.

5.

Transcriptome sequencing reveals the character of incomplete dosage compensation across multiple tissues in flycatchers.

Uebbing S, Künstner A, Mäkinen H, Ellegren H.

Genome Biol Evol. 2013;5(8):1555-66. doi: 10.1093/gbe/evt114.

6.

Dosage compensation is less effective in birds than in mammals.

Itoh Y, Melamed E, Yang X, Kampf K, Wang S, Yehya N, Van Nas A, Replogle K, Band MR, Clayton DF, Schadt EE, Lusis AJ, Arnold AP.

J Biol. 2007;6(1):2.

7.

The zebra finch neuropeptidome: prediction, detection and expression.

Xie F, London SE, Southey BR, Annangudi SP, Amare A, Rodriguez-Zas SL, Clayton DF, Sweedler JV.

BMC Biol. 2010 Apr 1;8:28. doi: 10.1186/1741-7007-8-28.

8.

Digital gene expression analysis of the zebra finch genome.

Ekblom R, Balakrishnan CN, Burke T, Slate J.

BMC Genomics. 2010 Apr 1;11:219. doi: 10.1186/1471-2164-11-219.

9.

General lack of global dosage compensation in ZZ/ZW systems? Broadening the perspective with RNA-seq.

Wolf JB, Bryk J.

BMC Genomics. 2011 Feb 1;12:91. doi: 10.1186/1471-2164-12-91.

10.

The genome of a songbird.

Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Lin YC, George J, Sweedler J, Southey B, Gunaratne P, Watson M, Nam K, Backström N, Smeds L, Nabholz B, Itoh Y, Whitney O, Pfenning AR, Howard J, Völker M, Skinner BM, Griffin DK, Ye L, McLaren WM, Flicek P, Quesada V, Velasco G, Lopez-Otin C, Puente XS, Olender T, Lancet D, Smit AF, Hubley R, Konkel MK, Walker JA, Batzer MA, Gu W, Pollock DD, Chen L, Cheng Z, Eichler EE, Stapley J, Slate J, Ekblom R, Birkhead T, Burke T, Burt D, Scharff C, Adam I, Richard H, Sultan M, Soldatov A, Lehrach H, Edwards SV, Yang SP, Li X, Graves T, Fulton L, Nelson J, Chinwalla A, Hou S, Mardis ER, Wilson RK.

Nature. 2010 Apr 1;464(7289):757-62. doi: 10.1038/nature08819.

11.

Genomic and neural analysis of the estradiol-synthetic pathway in the zebra finch.

London SE, Clayton DF.

BMC Neurosci. 2010 Apr 1;11:46. doi: 10.1186/1471-2202-11-46.

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14.

Zebra finch cell lines from naturally occurring tumors.

Itoh Y, Arnold AP.

In Vitro Cell Dev Biol Anim. 2011 Apr;47(4):280-2. doi: 10.1007/s11626-011-9392-9. Epub 2011 Feb 27.

15.

Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain.

Gunaratne PH, Lin YC, Benham AL, Drnevich J, Coarfa C, Tennakoon JB, Creighton CJ, Kim JH, Milosavljevic A, Watson M, Griffiths-Jones S, Clayton DF.

BMC Genomics. 2011 May 31;12(1):277. doi: 10.1186/1471-2164-12-277.

16.

Comparison of the chicken and zebra finch Z chromosomes shows evolutionary rearrangements.

Itoh Y, Kampf K, Arnold AP.

Chromosome Res. 2006;14(8):805-15. Epub 2007 Jan 19.

PMID:
17139532
17.

Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa.

Tong C, Wang X, Yu J, Wu J, Li W, Huang J, Dong C, Hua W, Liu S.

BMC Genomics. 2013 Oct 7;14:689. doi: 10.1186/1471-2164-14-689.

18.

Brain transcriptome of the violet-eared waxbill Uraeginthus granatina and recent evolution in the songbird genome.

Balakrishnan CN, Chapus C, Brewer MS, Clayton DF.

Open Biol. 2013 Sep 4;3(9):130063. doi: 10.1098/rsob.130063.

19.

Karyotypic polymorphism of the zebra finch Z chromosome.

Itoh Y, Kampf K, Balakrishnan CN, Arnold AP.

Chromosoma. 2011 Jun;120(3):255-64. doi: 10.1007/s00412-010-0308-3. Epub 2011 Jan 11.

20.

Does inbreeding affect gene expression in birds?

Hansson B, Naurin S, Hasselquist D.

Biol Lett. 2014 Sep;10(9). pii: 20140648. doi: 10.1098/rsbl.2014.0648.

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