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Results: 1 to 20 of 117

Similar articles for PubMed (Select 22912434)

1.

Comparative genome analysis between Aspergillus oryzae strains reveals close relationship between sites of mutation localization and regions of highly divergent genes among Aspergillus species.

Umemura M, Koike H, Yamane N, Koyama Y, Satou Y, Kikuzato I, Teruya M, Tsukahara M, Imada Y, Wachi Y, Miwa Y, Yano S, Tamano K, Kawarabayasi Y, Fujimori KE, Machida M, Hirano T.

DNA Res. 2012 Oct;19(5):375-82. doi: 10.1093/dnares/dss019. Epub 2012 Aug 21.

2.

Genome sequencing and analysis of Aspergillus oryzae.

Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, Kusumoto K, Arima T, Akita O, Kashiwagi Y, Abe K, Gomi K, Horiuchi H, Kitamoto K, Kobayashi T, Takeuchi M, Denning DW, Galagan JE, Nierman WC, Yu J, Archer DB, Bennett JW, Bhatnagar D, Cleveland TE, Fedorova ND, Gotoh O, Horikawa H, Hosoyama A, Ichinomiya M, Igarashi R, Iwashita K, Juvvadi PR, Kato M, Kato Y, Kin T, Kokubun A, Maeda H, Maeyama N, Maruyama J, Nagasaki H, Nakajima T, Oda K, Okada K, Paulsen I, Sakamoto K, Sawano T, Takahashi M, Takase K, Terabayashi Y, Wortman JR, Yamada O, Yamagata Y, Anazawa H, Hata Y, Koide Y, Komori T, Koyama Y, Minetoki T, Suharnan S, Tanaka A, Isono K, Kuhara S, Ogasawara N, Kikuchi H.

Nature. 2005 Dec 22;438(7071):1157-61.

PMID:
16372010
3.

Genomics of industrial Aspergilli and comparison with toxigenic relatives.

Machida M, Terabayashi Y, Sano M, Yamane N, Tamano K, Payne GA, Yu J, Cleveland TE, Nierman WC.

Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2008 Sep;25(9):1147-51. doi: 10.1080/02652030802273114.

PMID:
18798040
4.

Transcriptional regulation of genes on the non-syntenic blocks of Aspergillus oryzae and its functional relationship to solid-state cultivation.

Tamano K, Sano M, Yamane N, Terabayashi Y, Toda T, Sunagawa M, Koike H, Hatamoto O, Umitsuki G, Takahashi T, Koyama Y, Asai R, Abe K, Machida M.

Fungal Genet Biol. 2008 Feb;45(2):139-51. Epub 2007 Sep 25.

PMID:
17967552
5.

Fine de novo sequencing of a fungal genome using only SOLiD short read data: verification on Aspergillus oryzae RIB40.

Umemura M, Koyama Y, Takeda I, Hagiwara H, Ikegami T, Koike H, Machida M.

PLoS One. 2013 May 7;8(5):e63673. doi: 10.1371/journal.pone.0063673. Print 2013.

6.

Comparative genomic analysis of Aspergillus oryzae strains 3.042 and RIB40 for soy sauce fermentation.

Zhao G, Yao Y, Wang C, Hou L, Cao X.

Int J Food Microbiol. 2013 Jun 17;164(2-3):148-54. doi: 10.1016/j.ijfoodmicro.2013.03.027. Epub 2013 Apr 9.

PMID:
23673060
7.

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.

Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, D'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Peñalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW.

Nature. 2005 Dec 22;438(7071):1105-15.

PMID:
16372000
8.

What does genetic diversity of Aspergillus flavus tell us about Aspergillus oryzae?

Chang PK, Ehrlich KC.

Int J Food Microbiol. 2010 Apr 15;138(3):189-99. doi: 10.1016/j.ijfoodmicro.2010.01.033. Epub 2010 Feb 1. Review.

PMID:
20163884
9.

Elusive origins of the extra genes in Aspergillus oryzae.

Khaldi N, Wolfe KH.

PLoS One. 2008 Aug 22;3(8):e3036. doi: 10.1371/journal.pone.0003036.

10.

Genomics of Aspergillus oryzae.

Kobayashi T, Abe K, Asai K, Gomi K, Juvvadi PR, Kato M, Kitamoto K, Takeuchi M, Machida M.

Biosci Biotechnol Biochem. 2007 Mar;71(3):646-70. Epub 2007 Mar 7. Review.

11.

Comparison and analysis of the genomes of two Aspergillus oryzae strains.

Zhao G, Yao Y, Chen W, Cao X.

J Agric Food Chem. 2013 Aug 14;61(32):7805-9. doi: 10.1021/jf400080g. Epub 2013 Aug 5.

PMID:
23889147
12.

Draft genome sequence of Aspergillus oryzae strain 3.042.

Zhao G, Yao Y, Qi W, Wang C, Hou L, Zeng B, Cao X.

Eukaryot Cell. 2012 Sep;11(9):1178. doi: 10.1128/EC.00160-12.

13.
14.

[Genome sequencing of Aspergillus oryzae].

Machida M.

Tanpakushitsu Kakusan Koso. 2006 May;51(5):452-6. Review. Japanese. No abstract available.

PMID:
16686348
15.

Impact of Aspergillus oryzae genomics on industrial production of metabolites.

Abe K, Gomi K, Hasegawa F, Machida M.

Mycopathologia. 2006 Sep;162(3):143-53. Review.

PMID:
16944282
16.

Genomic analysis of the aconidial and high-performance protein producer, industrially relevant Aspergillus niger SH2 strain.

Yin C, Wang B, He P, Lin Y, Pan L.

Gene. 2014 May 15;541(2):107-14. doi: 10.1016/j.gene.2014.03.011. Epub 2014 Mar 11.

PMID:
24630962
17.

Identification of a novel polyketide synthase-nonribosomal peptide synthetase (PKS-NRPS) gene required for the biosynthesis of cyclopiazonic acid in Aspergillus oryzae.

Tokuoka M, Seshime Y, Fujii I, Kitamoto K, Takahashi T, Koyama Y.

Fungal Genet Biol. 2008 Dec;45(12):1608-15. doi: 10.1016/j.fgb.2008.09.006. Epub 2008 Sep 27.

PMID:
18854220
18.

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.

Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort PJ, Culley D, Thykaer J, Frisvad JC, Nielsen KF, Albang R, Albermann K, Berka RM, Braus GH, Braus-Stromeyer SA, Corrochano LM, Dai Z, van Dijck PW, Hofmann G, Lasure LL, Magnuson JK, Menke H, Meijer M, Meijer SL, Nielsen JB, Nielsen ML, van Ooyen AJ, Pel HJ, Poulsen L, Samson RA, Stam H, Tsang A, van den Brink JM, Atkins A, Aerts A, Shapiro H, Pangilinan J, Salamov A, Lou Y, Lindquist E, Lucas S, Grimwood J, Grigoriev IV, Kubicek CP, Martinez D, van Peij NN, Roubos JA, Nielsen J, Baker SE.

Genome Res. 2011 Jun;21(6):885-97. doi: 10.1101/gr.112169.110. Epub 2011 May 4.

19.

Genomics of Aspergillus oryzae: learning from the history of Koji mold and exploration of its future.

Machida M, Yamada O, Gomi K.

DNA Res. 2008 Aug;15(4):173-83. doi: 10.1093/dnares/dsn020. Review.

20.

Base composition and nucleosome density in exonic and intronic regions in genes of the filamentous ascomycetes Aspergillus nidulans and Aspergillus oryzae.

Nishida H, Katayama T, Suzuki Y, Kondo S, Horiuchi H.

Gene. 2013 Aug 1;525(1):5-10. doi: 10.1016/j.gene.2013.04.077. Epub 2013 May 8.

PMID:
23664982
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