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Items: 1 to 20 of 108

1.

Genomes of extremophile crucifers: new platforms for comparative genomics and beyond.

Dittami SM, Tonon T.

Genome Biol. 2012 Aug 16;13(8):166. doi: 10.1186/gb-2012-13-8-166.

2.

Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis.

Oh DH, Dassanayake M, Haas JS, Kropornika A, Wright C, d'Urzo MP, Hong H, Ali S, Hernandez A, Lambert GM, Inan G, Galbraith DW, Bressan RA, Yun DJ, Zhu JK, Cheeseman JM, Bohnert HJ.

Plant Physiol. 2010 Nov;154(3):1040-52. doi: 10.1104/pp.110.163923. Epub 2010 Sep 10.

3.

Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum).

Lee YP, Giorgi FM, Lohse M, Kvederaviciute K, Klages S, Usadel B, Meskiene I, Reinhardt R, Hincha DK.

BMC Genomics. 2013 Nov 14;14:793. doi: 10.1186/1471-2164-14-793.

4.

The genome of the extremophile crucifer Thellungiella parvula.

Dassanayake M, Oh DH, Haas JS, Hernandez A, Hong H, Ali S, Yun DJ, Bressan RA, Zhu JK, Bohnert HJ, Cheeseman JM.

Nat Genet. 2011 Aug 7;43(9):913-8. doi: 10.1038/ng.889.

5.

Comparative profiling of membrane lipids during water stress in Thellungiella salsuginea and its relative Arabidopsis thaliana.

Yu B, Li W.

Phytochemistry. 2014 Dec;108:77-86. doi: 10.1016/j.phytochem.2014.09.012. Epub 2014 Oct 9.

PMID:
25308761
6.

Insights into salt tolerance from the genome of Thellungiella salsuginea.

Wu HJ, Zhang Z, Wang JY, Oh DH, Dassanayake M, Liu B, Huang Q, Sun HX, Xia R, Wu Y, Wang YN, Yang Z, Liu Y, Zhang W, Zhang H, Chu J, Yan C, Fang S, Zhang J, Wang Y, Zhang F, Wang G, Lee SY, Cheeseman JM, Yang B, Li B, Min J, Yang L, Wang J, Chu C, Chen SY, Bohnert HJ, Zhu JK, Wang XJ, Xie Q.

Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):12219-24. doi: 10.1073/pnas.1209954109. Epub 2012 Jul 9.

7.

Comparative genomic analysis of 1047 completely sequenced cDNAs from an Arabidopsis-related model halophyte, Thellungiella halophila.

Taji T, Komatsu K, Katori T, Kawasaki Y, Sakata Y, Tanaka S, Kobayashi M, Toyoda A, Seki M, Shinozaki K.

BMC Plant Biol. 2010 Nov 24;10:261. doi: 10.1186/1471-2229-10-261.

8.

Genome structures and transcriptomes signify niche adaptation for the multiple-ion-tolerant extremophyte Schrenkiella parvula.

Oh DH, Hong H, Lee SY, Yun DJ, Bohnert HJ, Dassanayake M.

Plant Physiol. 2014 Apr;164(4):2123-38. doi: 10.1104/pp.113.233551. Epub 2014 Feb 21.

9.

Genome-wide identification of Thellungiella salsuginea microRNAs with putative roles in the salt stress response.

Zhang Q, Zhao C, Li M, Sun W, Liu Y, Xia H, Sun M, Li A, Li C, Zhao S, Hou L, Picimbon JF, Wang X, Zhao Y.

BMC Plant Biol. 2013 Nov 15;13:180. doi: 10.1186/1471-2229-13-180.

10.

Understanding Brassicaceae evolution through ancestral genome reconstruction.

Murat F, Louis A, Maumus F, Armero A, Cooke R, Quesneville H, Roest Crollius H, Salse J.

Genome Biol. 2015 Dec 10;16:262. doi: 10.1186/s13059-015-0814-y. Erratum in: Genome Biol. 2016;17(1):64.

11.

TsHKT1;2, a HKT1 homolog from the extremophile Arabidopsis relative Thellungiella salsuginea, shows K(+) specificity in the presence of NaCl.

Ali Z, Park HC, Ali A, Oh DH, Aman R, Kropornicka A, Hong H, Choi W, Chung WS, Kim WY, Bressan RA, Bohnert HJ, Lee SY, Yun DJ.

Plant Physiol. 2012 Mar;158(3):1463-74. doi: 10.1104/pp.111.193110. Epub 2012 Jan 11.

12.

Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana.

Donoghue MT, Keshavaiah C, Swamidatta SH, Spillane C.

BMC Evol Biol. 2011 Feb 18;11:47. doi: 10.1186/1471-2148-11-47.

13.

Beyond the Arabidopsis genome: opportunities for comparative genomics.

Hall AE, Fiebig A, Preuss D.

Plant Physiol. 2002 Aug;129(4):1439-47. Review. No abstract available.

14.

The Tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers.

Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Kuelahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, Becker A, Bräutigam A, Weber AP, Shi C, Zheng Z, Li W, Lv M, Tao Y, Wang J, Zou H, Quan Z, Hibberd JM, Zhang G, Zhu XG, Xu X, Schranz ME.

Plant Cell. 2013 Aug;25(8):2813-30. doi: 10.1105/tpc.113.113480. Epub 2013 Aug 27.

16.

Beyond the thale: comparative genomics and genetics of Arabidopsis relatives.

Koenig D, Weigel D.

Nat Rev Genet. 2015 May;16(5):285-98. doi: 10.1038/nrg3883. Epub 2015 Apr 9. Review.

PMID:
25854181
17.

Comparative genomics in the Brassicaceae: a family-wide perspective.

Schranz ME, Song BH, Windsor AJ, Mitchell-Olds T.

Curr Opin Plant Biol. 2007 Apr;10(2):168-75. Epub 2007 Feb 14. Review.

PMID:
17300984
18.

The Thellungiella salsuginea tonoplast aquaporin TsTIP1;2 functions in protection against multiple abiotic stresses.

Wang LL, Chen AP, Zhong NQ, Liu N, Wu XM, Wang F, Yang CL, Romero MF, Xia GX.

Plant Cell Physiol. 2014 Jan;55(1):148-61. doi: 10.1093/pcp/pct166. Epub 2013 Nov 9.

19.
20.

Using Arabidopsis-related model species (ARMS): growth, genetic transformation, and comparative genomics.

Batelli G, Oh DH, D'Urzo MP, Orsini F, Dassanayake M, Zhu JK, Bohnert HJ, Bressan RA, Maggio A.

Methods Mol Biol. 2014;1062:27-51. doi: 10.1007/978-1-62703-580-4_2.

PMID:
24057359
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