Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 117

1.

A comprehensive full factorial LC-MS/MS proteomics benchmark data set.

Wessels HJ, Bloemberg TG, van Dael M, Wehrens R, Buydens LM, van den Heuvel LP, Gloerich J.

Proteomics. 2012 Aug;12(14):2276-81. doi: 10.1002/pmic.201100284.

PMID:
22887946
[PubMed - indexed for MEDLINE]
2.

Enhanced characterization of complex proteomic samples using LC-MALDI MS/MS: exclusion of redundant peptides from MS/MS analysis in replicate runs.

Chen HS, Rejtar T, Andreev V, Moskovets E, Karger BL.

Anal Chem. 2005 Dec 1;77(23):7816-25.

PMID:
16316193
[PubMed - indexed for MEDLINE]
3.

Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.

Gehlenborg N, Yan W, Lee IY, Yoo H, Nieselt K, Hwang D, Aebersold R, Hood L.

Bioinformatics. 2009 Mar 1;25(5):682-3. doi: 10.1093/bioinformatics/btp005. Epub 2009 Jan 6.

PMID:
19129212
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

MSSimulator: Simulation of mass spectrometry data.

Bielow C, Aiche S, Andreotti S, Reinert K.

J Proteome Res. 2011 Jul 1;10(7):2922-9. doi: 10.1021/pr200155f. Epub 2011 Apr 28.

PMID:
21526843
[PubMed - indexed for MEDLINE]
5.

i-RUBY: a novel software for quantitative analysis of highly accurate shotgun-proteomics liquid chromatography/tandem mass spectrometry data obtained without stable-isotope labeling of proteins.

Wada K, Ogiwara A, Nagasaka K, Tanaka N, Komatsu Y.

Rapid Commun Mass Spectrom. 2011 Apr 15;25(7):960-8. doi: 10.1002/rcm.4943. Epub 2011 Mar 14.

PMID:
21416533
[PubMed - indexed for MEDLINE]
6.

Shotgun proteomics: a relative quantitative approach using Off-Gel electrophoresis and LC-MS/MS.

Geiser L, Dayon L, Vaezzadeh AR, Hochstrasser DF.

Methods Mol Biol. 2011;681:459-72. doi: 10.1007/978-1-60761-913-0_27.

PMID:
20978983
[PubMed - indexed for MEDLINE]
7.

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses.

Rudnick PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL, Ham AJ, Jaffe JD, Kinsinger CR, Mesri M, Neubert TA, Schilling B, Tabb DL, Tegeler TJ, Vega-Montoto L, Variyath AM, Wang M, Wang P, Whiteaker JR, Zimmerman LJ, Carr SA, Fisher SJ, Gibson BW, Paulovich AG, Regnier FE, Rodriguez H, Spiegelman C, Tempst P, Liebler DC, Stein SE.

Mol Cell Proteomics. 2010 Feb;9(2):225-41. doi: 10.1074/mcp.M900223-MCP200. Epub 2009 Oct 16.

PMID:
19837981
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Dansyl-peptides matrix-assisted laser desorption/ionization mass spectrometric (MALDI-MS) and tandem mass spectrometric (MS/MS) features improve the liquid chromatography/MALDI-MS/MS analysis of the proteome.

Chiappetta G, Ndiaye S, Demey E, Haddad I, Marino G, Amoresano A, Vinh J.

Rapid Commun Mass Spectrom. 2010 Oct 30;24(20):3021-32. doi: 10.1002/rcm.4734.

PMID:
20872635
[PubMed - indexed for MEDLINE]
9.

Comprehensive phosphoproteome analysis of INS-1 pancreatic β-cells using various digestion strategies coupled with liquid chromatography-tandem mass spectrometry.

Han D, Moon S, Kim Y, Ho WK, Kim K, Kang Y, Jun H, Kim Y.

J Proteome Res. 2012 Apr 6;11(4):2206-23. doi: 10.1021/pr200990b. Epub 2012 Mar 14.

PMID:
22276854
[PubMed - indexed for MEDLINE]
10.

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.

Mueller LN, Rinner O, Schmidt A, Letarte S, Bodenmiller B, Brusniak MY, Vitek O, Aebersold R, Müller M.

Proteomics. 2007 Oct;7(19):3470-80.

PMID:
17726677
[PubMed - indexed for MEDLINE]
11.

Design and analysis of quantitative differential proteomics investigations using LC-MS technology.

Bukhman YV, Dharsee M, Ewing R, Chu P, Topaloglou T, Le Bihan T, Goh T, Duewel H, Stewart II, Wisniewski JR, Ng NF.

J Bioinform Comput Biol. 2008 Feb;6(1):107-23.

PMID:
18324749
[PubMed - indexed for MEDLINE]
12.

Application of electrostatic repulsion hydrophilic interaction chromatography to the characterization of proteome, glycoproteome, and phosphoproteome using nano LC-MS/MS.

Hao P, Zhang H, Sze SK.

Methods Mol Biol. 2011;790:305-18. doi: 10.1007/978-1-61779-319-6_23.

PMID:
21948424
[PubMed - indexed for MEDLINE]
13.

Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements.

Lange E, Tautenhahn R, Neumann S, Gröpl C.

BMC Bioinformatics. 2008 Sep 15;9:375. doi: 10.1186/1471-2105-9-375.

PMID:
18793413
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

LFQuant: a label-free fast quantitative analysis tool for high-resolution LC-MS/MS proteomics data.

Zhang W, Zhang J, Xu C, Li N, Liu H, Ma J, Zhu Y, Xie H.

Proteomics. 2012 Dec;12(23-24):3475-84. doi: 10.1002/pmic.201200017.

PMID:
23081734
[PubMed - indexed for MEDLINE]
15.

RIBAR and xRIBAR: Methods for reproducible relative MS/MS-based label-free protein quantification.

Colaert N, Gevaert K, Martens L.

J Proteome Res. 2011 Jul 1;10(7):3183-9. doi: 10.1021/pr200219x. Epub 2011 May 23.

PMID:
21604685
[PubMed - indexed for MEDLINE]
16.

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.

BMC Bioinformatics. 2008 Dec 16;9:542. doi: 10.1186/1471-2105-9-542.

PMID:
19087345
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Isoform analysis of LC-MS/MS data from multidimensional fractionation of the serum proteome.

Krasnoselsky AL, Faca VM, Pitteri SJ, Zhang Q, Hanash SM.

J Proteome Res. 2008 Jun;7(6):2546-52. doi: 10.1021/pr7007219. Epub 2008 Apr 18.

PMID:
18419151
[PubMed - indexed for MEDLINE]
18.

Comparative LC-MS: a landscape of peaks and valleys.

America AH, Cordewener JH.

Proteomics. 2008 Feb;8(4):731-49. doi: 10.1002/pmic.200700694. Review.

PMID:
18297651
[PubMed - indexed for MEDLINE]
19.

Improving protein and proteome coverage through data-independent multiplexed peptide fragmentation.

Blackburn K, Mbeunkui F, Mitra SK, Mentzel T, Goshe MB.

J Proteome Res. 2010 Jul 2;9(7):3621-37. doi: 10.1021/pr100144z.

PMID:
20450226
[PubMed - indexed for MEDLINE]
20.

Shotgun proteomics: a qualitative approach applying isoelectric focusing on immobilized pH gradient and LC-MS/MS.

Geiser L, Vaezzadeh AR, Deshusses JM, Hochstrasser DF.

Methods Mol Biol. 2011;681:449-58. doi: 10.1007/978-1-60761-913-0_26.

PMID:
20978982
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk