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Items: 1 to 20 of 106

1.

The application of information theory to biochemical signaling systems.

Rhee A, Cheong R, Levchenko A.

Phys Biol. 2012 Aug;9(4):045011. doi: 10.1088/1478-3975/9/4/045011. Epub 2012 Aug 7.

2.

Information theory and the ethylene genetic network.

González-García JS, Díaz J.

Plant Signal Behav. 2011 Oct;6(10):1483-98. doi: 10.4161/psb.6.10.16424. Epub 2011 Oct 1. Review.

3.

Information theory and signal transduction systems: from molecular information processing to network inference.

Mc Mahon SS, Sim A, Filippi S, Johnson R, Liepe J, Smith D, Stumpf MP.

Semin Cell Dev Biol. 2014 Nov;35:98-108. doi: 10.1016/j.semcdb.2014.06.011. Epub 2014 Jun 19. Review.

PMID:
24953199
4.

Design and analysis of molecular relay channels: an information theoretic approach.

Nakano T, Liu JQ.

IEEE Trans Nanobioscience. 2010 Sep;9(3):213-21. doi: 10.1109/TNB.2010.2050070. Epub 2010 Jun 3.

PMID:
20525537
5.

Information processing in bacteria: memory, computation, and statistical physics: a key issues review.

Lan G, Tu Y.

Rep Prog Phys. 2016 May;79(5):052601. doi: 10.1088/0034-4885/79/5/052601. Epub 2016 Apr 8.

PMID:
27058315
6.

A framework for designing and analyzing binary decision-making strategies in cellular systems.

Porter JR, Andrews BW, Iglesias PA.

Integr Biol (Camb). 2012 Mar;4(3):310-7. doi: 10.1039/C2IB90009B. Epub 2012 Mar 1.

7.

Information transduction capacity of noisy biochemical signaling networks.

Cheong R, Rhee A, Wang CJ, Nemenman I, Levchenko A.

Science. 2011 Oct 21;334(6054):354-8. doi: 10.1126/science.1204553. Epub 2011 Sep 15.

8.

Information theoretical quantification of cooperativity in signalling complexes.

Lenaerts T, Ferkinghoff-Borg J, Schymkowitz J, Rousseau F.

BMC Syst Biol. 2009 Jan 16;3:9. doi: 10.1186/1752-0509-3-9.

9.

An information theoretical analysis of kinase activated phosphorylation dephosphorylation cycle.

Qian H, Roy S.

IEEE Trans Nanobioscience. 2012 Sep;11(3):289-95. doi: 10.1109/TNB.2011.2182658. Epub 2012 Feb 10.

PMID:
22334038
10.

Information theory based approaches to cellular signaling.

Waltermann C, Klipp E.

Biochim Biophys Acta. 2011 Oct;1810(10):924-32. doi: 10.1016/j.bbagen.2011.07.009. Epub 2011 Jul 23. Review.

PMID:
21798319
11.

Information transfer in signaling pathways: a study using coupled simulated and experimental data.

Pahle J, Green AK, Dixon CJ, Kummer U.

BMC Bioinformatics. 2008 Mar 4;9:139. doi: 10.1186/1471-2105-9-139.

12.

Methodologies for the modeling and simulation of biochemical networks, illustrated for signal transduction pathways: a primer.

ElKalaawy N, Wassal A.

Biosystems. 2015 Mar;129:1-18. doi: 10.1016/j.biosystems.2015.01.008. Epub 2015 Jan 28. Review.

PMID:
25637875
13.

Molecular codes in biological and chemical reaction networks.

Görlich D, Dittrich P.

PLoS One. 2013;8(1):e54694. doi: 10.1371/journal.pone.0054694. Epub 2013 Jan 23.

14.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
15.

Analysis of cellular signal transduction from an information theoretic approach.

Uda S, Kuroda S.

Semin Cell Dev Biol. 2016 Mar;51:24-31. doi: 10.1016/j.semcdb.2015.12.011. Epub 2015 Dec 19. Review.

PMID:
26710655
16.

Information-theoretic model of evolution over protein communication channel.

Gong L, Bouaynaya N, Schonfeld D.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Jan-Mar;8(1):143-51. doi: 10.1109/TCBB.2009.1.

PMID:
21071803
17.

Theoretical aspects and modelling of cellular decision making, cell killing and information-processing in photodynamic therapy of cancer.

Gkigkitzis I.

BMC Med Genomics. 2013;6 Suppl 3:S3. doi: 10.1186/1755-8794-6-S3-S3. Epub 2013 Nov 11.

18.

Mutual information in time-varying biochemical systems.

Tostevin F, ten Wolde PR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jun;81(6 Pt 1):061917. Epub 2010 Jun 16.

PMID:
20866450
19.

Information processing in the adaptation of Saccharomyces cerevisiae to osmotic stress: an analysis of the phosphorelay system.

Uschner F, Klipp E.

Syst Synth Biol. 2014 Dec;8(4):297-306. doi: 10.1007/s11693-014-9146-6. Epub 2014 Apr 19.

20.

Discrete dynamic modeling of cellular signaling networks.

Albert R, Wang RS.

Methods Enzymol. 2009;467:281-306. doi: 10.1016/S0076-6879(09)67011-7.

PMID:
19897097
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