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De novo transcriptome assembly and SNP discovery in the wing polymorphic salt marsh beetle Pogonus chalceus (Coleoptera, Carabidae).

Van Belleghem SM, Roelofs D, Van Houdt J, Hendrickx F.

PLoS One. 2012;7(8):e42605. doi: 10.1371/journal.pone.0042605. Epub 2012 Aug 1.


De novo assembly of the Indo-Pacific humpback dolphin leucocyte transcriptome to identify putative genes involved in the aquatic adaptation and immune response.

Gui D, Jia K, Xia J, Yang L, Chen J, Wu Y, Yi M.

PLoS One. 2013 Aug 28;8(8):e72417. doi: 10.1371/journal.pone.0072417. eCollection 2013.


Developmental gene discovery in a hemimetabolous insect: de novo assembly and annotation of a transcriptome for the cricket Gryllus bimaculatus.

Zeng V, Ewen-Campen B, Horch HW, Roth S, Mito T, Extavour CG.

PLoS One. 2013 May 6;8(5):e61479. doi: 10.1371/journal.pone.0061479. Print 2013.


Sequencing, De Novo assembly and annotation of the Colorado Potato Beetle, Leptinotarsa decemlineata, Transcriptome.

Kumar A, Congiu L, Lindström L, Piiroinen S, Vidotto M, Grapputo A.

PLoS One. 2014 Jan 23;9(1):e86012. doi: 10.1371/journal.pone.0086012. eCollection 2014.


Transcriptome and gene expression analysis of the rice leaf folder, Cnaphalocrosis medinalis.

Li SW, Yang H, Liu YF, Liao QR, Du J, Jin DC.

PLoS One. 2012;7(11):e47401. doi: 10.1371/journal.pone.0047401. Epub 2012 Nov 19.


De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes.

Ashrafi H, Hill T, Stoffel K, Kozik A, Yao J, Chin-Wo SR, Van Deynze A.

BMC Genomics. 2012 Oct 30;13:571. doi: 10.1186/1471-2164-13-571.


A tight association in two genetically unlinked dispersal related traits in sympatric and allopatric salt marsh beetle populations.

Van Belleghem SM, Hendrickx F.

Genetica. 2014 Feb;142(1):1-9. doi: 10.1007/s10709-013-9749-y. Epub 2013 Dec 3.


Gene discovery in the horned beetle Onthophagus taurus.

Choi JH, Kijimoto T, Snell-Rood E, Tae H, Yang Y, Moczek AP, Andrews J.

BMC Genomics. 2010 Dec 14;11:703. doi: 10.1186/1471-2164-11-703.


Transcriptome analysis of the oriental fruit fly (Bactrocera dorsalis).

Shen GM, Dou W, Niu JZ, Jiang HB, Yang WJ, Jia FX, Hu F, Cong L, Wang JJ.

PLoS One. 2011;6(12):e29127. doi: 10.1371/journal.pone.0029127. Epub 2011 Dec 15.


De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity.

Iorizzo M, Senalik DA, Grzebelus D, Bowman M, Cavagnaro PF, Matvienko M, Ashrafi H, Van Deynze A, Simon PW.

BMC Genomics. 2011 Aug 2;12:389. doi: 10.1186/1471-2164-12-389.


Transcriptomic analysis of endangered Chinese salamander: identification of immune, sex and reproduction-related genes and genetic markers.

Che R, Sun Y, Wang R, Xu T.

PLoS One. 2014 Jan 31;9(1):e87940. doi: 10.1371/journal.pone.0087940. eCollection 2014.


Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate.

Babik W, Stuglik M, Qi W, Kuenzli M, Kuduk K, Koteja P, Radwan J.

BMC Genomics. 2010 Jun 21;11:390. doi: 10.1186/1471-2164-11-390.


Nutrigenomics in Arma chinensis: transcriptome analysis of Arma chinensis fed on artificial diet and Chinese oak silk moth Antheraea pernyi pupae.

Zou D, Coudron TA, Liu C, Zhang L, Wang M, Chen H.

PLoS One. 2013 Apr 11;8(4):e60881. doi: 10.1371/journal.pone.0060881. Print 2013.


Next generation sequencing based transcriptome analysis of septic-injury responsive genes in the beetle Tribolium castaneum.

Altincicek B, Elashry A, Guz N, Grundler FM, Vilcinskas A, Dehne HW.

PLoS One. 2013;8(1):e52004. doi: 10.1371/journal.pone.0052004. Epub 2013 Jan 9.


De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum.

Der JP, Barker MS, Wickett NJ, dePamphilis CW, Wolf PG.

BMC Genomics. 2011 Feb 8;12:99. doi: 10.1186/1471-2164-12-99.


Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing.

Li X, Acharya A, Farmer AD, Crow JA, Bharti AK, Kramer RS, Wei Y, Han Y, Gou J, May GD, Monteros MJ, Brummer EC.

BMC Genomics. 2012 Oct 29;13:568. doi: 10.1186/1471-2164-13-568.


Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers.

Wei W, Qi X, Wang L, Zhang Y, Hua W, Li D, Lv H, Zhang X.

BMC Genomics. 2011 Sep 19;12:451. doi: 10.1186/1471-2164-12-451.

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