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Items: 1 to 20 of 118

1.

The relation of codon bias to tissue-specific gene expression in Arabidopsis thaliana.

Camiolo S, Farina L, Porceddu A.

Genetics. 2012 Oct;192(2):641-9. doi: 10.1534/genetics.112.143677. Epub 2012 Aug 3.

2.

Selective constraints on codon usage of nuclear genes from Arabidopsis thaliana.

Morton BR, Wright SI.

Mol Biol Evol. 2007 Jan;24(1):122-9. Epub 2006 Oct 4.

3.

Codon usage bias is correlated with gene expression levels in the fission yeast Schizosaccharomyces pombe.

Hiraoka Y, Kawamata K, Haraguchi T, Chikashige Y.

Genes Cells. 2009 Apr;14(4):499-509. doi: 10.1111/j.1365-2443.2009.01284.x. Erratum in: Genes Cells. 2010 Jun;15(7):799-800.

4.

Codon usage biases of transposable elements and host nuclear genes in Arabidopsis thaliana and Oryza sativa.

Jia J, Xue Q.

Genomics Proteomics Bioinformatics. 2009 Dec;7(4):175-84. doi: 10.1016/S1672-0229(08)60047-9.

5.

Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata.

Wright SI, Yau CB, Looseley M, Meyers BC.

Mol Biol Evol. 2004 Sep;21(9):1719-26. Epub 2004 Jun 16.

6.

Differential selective constraints shaping codon usage pattern of housekeeping and tissue-specific homologous genes of rice and arabidopsis.

Mukhopadhyay P, Basak S, Ghosh TC.

DNA Res. 2008 Dec;15(6):347-56. doi: 10.1093/dnares/dsn023. Epub 2008 Sep 30.

7.

Gender-specific selection on codon usage in plant genomes.

Whittle CA, Malik MR, Krochko JE.

BMC Genomics. 2007 Jun 13;8:169.

8.

In Arabidopsis thaliana codon volatility scores reflect GC3 composition rather than selective pressure.

O'Connell MJ, Doyle AM, Juenger TE, Donoghue MT, Keshavaiah C, Tuteja R, Spillane C.

BMC Res Notes. 2012 Jul 17;5:359. doi: 10.1186/1756-0500-5-359.

9.

Codon usage and gene function are related in sequences of Arabidopsis thaliana.

Chiapello H, Lisacek F, Caboche M, Hénaut A.

Gene. 1998 Mar 16;209(1-2):GC1-GC38.

PMID:
9583944
10.
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12.

Analysis of synonymous codon usage in Zea mays.

Liu H, He R, Zhang H, Huang Y, Tian M, Zhang J.

Mol Biol Rep. 2010 Feb;37(2):677-84. doi: 10.1007/s11033-009-9521-7. Epub 2009 Mar 29.

PMID:
19330534
13.

Mutation bias is the driving force of codon usage in the Gallus gallus genome.

Rao Y, Wu G, Wang Z, Chai X, Nie Q, Zhang X.

DNA Res. 2011 Dec;18(6):499-512. doi: 10.1093/dnares/dsr035. Epub 2011 Oct 27.

14.

Rapid divergence of codon usage patterns within the rice genome.

Wang HC, Hickey DA.

BMC Evol Biol. 2007 Feb 8;7 Suppl 1:S6.

15.

Adaptive basis of codon usage in the haploid moss Physcomitrella patens.

Stenøien HK.

Heredity (Edinb). 2005 Jan;94(1):87-93.

17.

Mutational bias and translational selection shaping the codon usage pattern of tissue-specific genes in rice.

Liu Q.

PLoS One. 2012;7(10):e48295. doi: 10.1371/journal.pone.0048295. Epub 2012 Oct 29.

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19.

Synonymous codon usage in Kluyveromyces lactis.

Lloyd AT, Sharp PM.

Yeast. 1993 Nov;9(11):1219-28.

PMID:
8109171
20.

Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales.

Gu W, Zhou T, Ma J, Sun X, Lu Z.

Virus Res. 2004 May;101(2):155-61.

PMID:
15041183
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