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Results: 1 to 20 of 354

1.

A fast and noise-resilient approach to detect rare-variant associations with deep sequencing data for complex disorders.

Cheung YH, Wang G, Leal SM, Wang S.

Genet Epidemiol. 2012 Nov;36(7):675-85. doi: 10.1002/gepi.21662. Epub 2012 Aug 3.

PMID:
22865616
[PubMed - indexed for MEDLINE]
2.
3.

A novel genome-information content-based statistic for genome-wide association analysis designed for next-generation sequencing data.

Luo L, Zhu Y, Xiong M.

J Comput Biol. 2012 Jun;19(6):731-44. doi: 10.1089/cmb.2012.0035. Epub 2012 May 31.

PMID:
22651812
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Association studies for next-generation sequencing.

Luo L, Boerwinkle E, Xiong M.

Genome Res. 2011 Jul;21(7):1099-108. doi: 10.1101/gr.115998.110. Epub 2011 Apr 26.

PMID:
21521787
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data.

Li B, Leal SM.

Am J Hum Genet. 2008 Sep;83(3):311-21. doi: 10.1016/j.ajhg.2008.06.024. Epub 2008 Aug 7.

PMID:
18691683
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

GENOME-WIDE ASSOCIATION MAPPING AND RARE ALLELES: FROM POPULATION GENOMICS TO PERSONALIZED MEDICINE - Session Introduction.

DE LA Vega FM, Bustamante CD, Leal SM.

Pac Symp Biocomput. 2011:74-5.

PMID:
21121034
[PubMed - as supplied by publisher]
Free PMC Article
7.

Optimal unified approach for rare-variant association testing with application to small-sample case-control whole-exome sequencing studies.

Lee S, Emond MJ, Bamshad MJ, Barnes KC, Rieder MJ, Nickerson DA; NHLBI GO Exome Sequencing Project—ESP Lung Project Team, Christiani DC, Wurfel MM, Lin X.

Am J Hum Genet. 2012 Aug 10;91(2):224-37. doi: 10.1016/j.ajhg.2012.06.007. Epub 2012 Aug 2.

PMID:
22863193
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Identification of genetic risk variants for deep vein thrombosis by multiplexed next-generation sequencing of 186 hemostatic/pro-inflammatory genes.

Lotta LA, Wang M, Yu J, Martinelli I, Yu F, Passamonti SM, Consonni D, Pappalardo E, Menegatti M, Scherer SE, Lewis LL, Akbar H, Wu Y, Bainbridge MN, Muzny DM, Mannucci PM, Gibbs RA, Peyvandi F.

BMC Med Genomics. 2012 Feb 21;5:7. doi: 10.1186/1755-8794-5-7.

PMID:
22353194
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A new testing strategy to identify rare variants with either risk or protective effect on disease.

Ionita-Laza I, Buxbaum JD, Laird NM, Lange C.

PLoS Genet. 2011 Feb 3;7(2):e1001289. doi: 10.1371/journal.pgen.1001289.

PMID:
21304886
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Extending rare-variant testing strategies: analysis of noncoding sequence and imputed genotypes.

Zawistowski M, Gopalakrishnan S, Ding J, Li Y, Grimm S, Zöllner S.

Am J Hum Genet. 2010 Nov 12;87(5):604-17. doi: 10.1016/j.ajhg.2010.10.012.

PMID:
21070896
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Two adaptive weighting methods to test for rare variant associations in family-based designs.

Fang S, Sha Q, Zhang S.

Genet Epidemiol. 2012 Jul;36(5):499-507. doi: 10.1002/gepi.21646. Epub 2012 Jun 1.

PMID:
22674630
[PubMed - indexed for MEDLINE]
12.

Detecting rare variant effects using extreme phenotype sampling in sequencing association studies.

Barnett IJ, Lee S, Lin X.

Genet Epidemiol. 2013 Feb;37(2):142-51. doi: 10.1002/gepi.21699. Epub 2012 Nov 26.

PMID:
23184518
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A generalized genetic random field method for the genetic association analysis of sequencing data.

Li M, He Z, Zhang M, Zhan X, Wei C, Elston RC, Lu Q.

Genet Epidemiol. 2014 Apr;38(3):242-53. doi: 10.1002/gepi.21790. Epub 2014 Jan 30.

PMID:
24482034
[PubMed - indexed for MEDLINE]
14.

A new expectation-maximization statistical test for case-control association studies considering rare variants obtained by high-throughput sequencing.

Gordon D, Finch SJ, De La Vega FM.

Hum Hered. 2011;71(2):113-25. doi: 10.1159/000325590. Epub 2011 Jul 6. Erratum in: Hum Hered. 2011;72(1):53. De La Vega, Francisco [corrected to De La Vega, Francisco M].

PMID:
21734402
[PubMed - indexed for MEDLINE]
15.

Smoothed functional principal component analysis for testing association of the entire allelic spectrum of genetic variation.

Luo L, Zhu Y, Xiong M.

Eur J Hum Genet. 2013 Feb;21(2):217-24. doi: 10.1038/ejhg.2012.141. Epub 2012 Jul 11.

PMID:
22781089
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Resequencing of pooled DNA for detecting disease associations with rare variants.

Wang T, Lin CY, Rohan TE, Ye K.

Genet Epidemiol. 2010 Jul;34(5):492-501. doi: 10.1002/gepi.20502.

PMID:
20578089
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Reconsidering association testing methods using single-variant test statistics as alternatives to pooling tests for sequence data with rare variants.

Kinnamon DD, Hershberger RE, Martin ER.

PLoS One. 2012;7(2):e30238. doi: 10.1371/journal.pone.0030238. Epub 2012 Feb 17.

PMID:
22363423
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets.

Pope BJ, Nguyen-Dumont T, Odefrey F, Hammet F, Bell R, Tao K, Tavtigian SV, Goldgar DE, Lonie A, Southey MC, Park DJ.

BMC Bioinformatics. 2013 Feb 25;14:65. doi: 10.1186/1471-2105-14-65.

PMID:
23441864
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

On the analysis of sequence data: testing for disease susceptibility loci using patterns of linkage disequilibrium.

Lipman PJ, Yip WK, AlChawa T, Ludwig KU, Mangold E, Lange C.

Genet Epidemiol. 2011 Dec;35(8):880-6. doi: 10.1002/gepi.20638.

PMID:
22125225
[PubMed - indexed for MEDLINE]
20.

Rare variant association testing for next-generation sequencing data via hierarchical clustering.

Tachmazidou I, Morris A, Zeggini E.

Hum Hered. 2012;74(3-4):165-71. doi: 10.1159/000346022. Epub 2013 Apr 11.

PMID:
23594494
[PubMed - indexed for MEDLINE]
Free PMC Article

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