Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 205

1.

Microbial 16S rRNA Ion Tag and community metagenome sequencing using the Ion Torrent (PGM) Platform.

Whiteley AS, Jenkins S, Waite I, Kresoje N, Payne H, Mullan B, Allcock R, O'Donnell A.

J Microbiol Methods. 2012 Oct;91(1):80-8. doi: 10.1016/j.mimet.2012.07.008. Epub 2012 Jul 29.

PMID:
22849830
[PubMed - indexed for MEDLINE]
2.

Novel primers for 16S rRNA-based archaeal community analyses in environmental samples.

Gantner S, Andersson AF, Alonso-Sáez L, Bertilsson S.

J Microbiol Methods. 2011 Jan;84(1):12-8. doi: 10.1016/j.mimet.2010.10.001. Epub 2010 Oct 19.

PMID:
20940022
[PubMed - indexed for MEDLINE]
3.

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing.

Lee CK, Herbold CW, Polson SW, Wommack KE, Williamson SJ, McDonald IR, Cary SC.

PLoS One. 2012;7(9):e44224. doi: 10.1371/journal.pone.0044224. Epub 2012 Sep 6.

PMID:
22970184
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Bacterial community shift in treated periodontitis patients revealed by ion torrent 16S rRNA gene amplicon sequencing.

Jünemann S, Prior K, Szczepanowski R, Harks I, Ehmke B, Goesmann A, Stoye J, Harmsen D.

PLoS One. 2012;7(8):e41606. doi: 10.1371/journal.pone.0041606. Epub 2012 Aug 1.

PMID:
22870235
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A 'universal' type II chaperonin PCR detection system for the investigation of Archaea in complex microbial communities.

Chaban B, Hill JE.

ISME J. 2012 Feb;6(2):430-9. doi: 10.1038/ismej.2011.96. Epub 2011 Jul 21.

PMID:
21776031
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

High throughput sequencing methods for microbiome profiling: application to food animal systems.

Highlander SK.

Anim Health Res Rev. 2012 Jun;13(1):40-53. doi: 10.1017/S1466252312000126. Review.

PMID:
22853944
[PubMed - indexed for MEDLINE]
7.

The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation.

Gilbert JA, Field D, Swift P, Thomas S, Cummings D, Temperton B, Weynberg K, Huse S, Hughes M, Joint I, Somerfield PJ, Mühling M.

PLoS One. 2010 Nov 29;5(11):e15545. doi: 10.1371/journal.pone.0015545.

PMID:
21124740
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems.

Roux S, Enault F, Bronner G, Debroas D.

FEMS Microbiol Ecol. 2011 Dec;78(3):617-28. doi: 10.1111/j.1574-6941.2011.01190.x. Epub 2011 Sep 19.

PMID:
22066608
[PubMed - indexed for MEDLINE]
9.

Computational challenges of sequence classification in microbiomic data.

Ribeca P, Valiente G.

Brief Bioinform. 2011 Nov;12(6):614-25. doi: 10.1093/bib/bbr019. Epub 2011 Apr 18.

PMID:
21504986
[PubMed - indexed for MEDLINE]
Free Article
10.

Bacterial and archaeal phylogenetic diversity associated with swine sludge from an anaerobic treatment lagoon.

Cardinali-Rezende J, Pereira ZL, Sanz JL, Chartone-Souza E, Nascimento AM.

World J Microbiol Biotechnol. 2012 Nov;28(11):3187-95. doi: 10.1007/s11274-012-1129-8. Epub 2012 Jul 25.

PMID:
22828793
[PubMed - indexed for MEDLINE]
11.

Inter-field variability in the microbial communities of hydrothermal vent deposits from a back-arc basin.

Flores GE, Shakya M, Meneghin J, Yang ZK, Seewald JS, Geoff Wheat C, Podar M, Reysenbach AL.

Geobiology. 2012 Jul;10(4):333-46. doi: 10.1111/j.1472-4669.2012.00325.x. Epub 2012 Mar 23.

PMID:
22443386
[PubMed - indexed for MEDLINE]
12.

Microbial community structure and dynamics during anaerobic digestion of various agricultural waste materials.

Ziganshin AM, Liebetrau J, Pröter J, Kleinsteuber S.

Appl Microbiol Biotechnol. 2013 Jun;97(11):5161-74. doi: 10.1007/s00253-013-4867-0. Epub 2013 Apr 28.

PMID:
23624683
[PubMed - indexed for MEDLINE]
13.

Comparative survey of rumen microbial communities and metabolites across one caprine and three bovine groups, using bar-coded pyrosequencing and ¹H nuclear magnetic resonance spectroscopy.

Lee HJ, Jung JY, Oh YK, Lee SS, Madsen EL, Jeon CO.

Appl Environ Microbiol. 2012 Sep;78(17):5983-93. doi: 10.1128/AEM.00104-12. Epub 2012 Jun 15.

PMID:
22706048
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences.

Liu B, Gibbons T, Ghodsi M, Treangen T, Pop M.

BMC Genomics. 2011;12 Suppl 2:S4. doi: 10.1186/1471-2164-12-S2-S4. Epub 2011 Jul 27.

PMID:
21989143
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing.

Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer F, Szczepanowski R, Al-Soud WA, Sørensen S, Pühler A, Schlüter A.

J Biotechnol. 2012 Apr 30;158(4):248-58. doi: 10.1016/j.jbiotec.2012.01.020. Epub 2012 Feb 8.

PMID:
22342600
[PubMed - indexed for MEDLINE]
16.

Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities.

Justice NB, Pan C, Mueller R, Spaulding SE, Shah V, Sun CL, Yelton AP, Miller CS, Thomas BC, Shah M, VerBerkmoes N, Hettich R, Banfield JF.

Appl Environ Microbiol. 2012 Dec;78(23):8321-30. doi: 10.1128/AEM.01938-12. Epub 2012 Sep 21.

PMID:
23001646
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets.

Pinto AJ, Raskin L.

PLoS One. 2012;7(8):e43093. doi: 10.1371/journal.pone.0043093. Epub 2012 Aug 15.

PMID:
22905208
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Community analysis of a full-scale anaerobic bioreactor treating paper mill wastewater.

Roest K, Heilig HG, Smidt H, de Vos WM, Stams AJ, Akkermans AD.

Syst Appl Microbiol. 2005 Mar;28(2):175-85.

PMID:
15830810
[PubMed - indexed for MEDLINE]
19.

Comparative microbial diversity analyses of modern marine thrombolitic mats by barcoded pyrosequencing.

Mobberley JM, Ortega MC, Foster JS.

Environ Microbiol. 2012 Jan;14(1):82-100. doi: 10.1111/j.1462-2920.2011.02509.x. Epub 2011 Jun 10.

PMID:
21658172
[PubMed - indexed for MEDLINE]
20.

Molecular diversity of the rumen microbiome of Norwegian reindeer on natural summer pasture.

Sundset MA, Edwards JE, Cheng YF, Senosiain RS, Fraile MN, Northwood KS, Praesteng KE, Glad T, Mathiesen SD, Wright AD.

Microb Ecol. 2009 Feb;57(2):335-48. doi: 10.1007/s00248-008-9414-7. Epub 2008 Jul 8.

PMID:
18604648
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk