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Results: 1 to 20 of 87

1.

Structural characteristics of yeast F1-ATPase before and after 16-degree rotation of the γ subunit: theoretical analysis focused on the water-entropy effect.

Yoshidome T, Ito Y, Matubayasi N, Ikeguchi M, Kinoshita M.

J Chem Phys. 2012 Jul 21;137(3):035102. doi: 10.1063/1.4734298.

PMID:
22830731
[PubMed - indexed for MEDLINE]
2.

Rotation mechanism of F1-ATPase: crucial importance of the water entropy effect.

Yoshidome T, Ito Y, Ikeguchi M, Kinoshita M.

J Am Chem Soc. 2011 Mar 23;133(11):4030-9. doi: 10.1021/ja109594y. Epub 2011 Feb 24.

PMID:
21348521
[PubMed - indexed for MEDLINE]
3.

Molecular dynamics simulations of yeast F1-ATPase before and after 16° rotation of the γ subunit.

Ito Y, Yoshidome T, Matubayasi N, Kinoshita M, Ikeguchi M.

J Phys Chem B. 2013 Mar 28;117(12):3298-307. doi: 10.1021/jp312499u. Epub 2013 Mar 14.

PMID:
23452086
[PubMed - indexed for MEDLINE]
4.

A theoretical analysis on characteristics of protein structures induced by cold denaturation.

Oshima H, Yoshidome T, Amano K, Kinoshita M.

J Chem Phys. 2009 Nov 28;131(20):205102. doi: 10.1063/1.3265985.

PMID:
19947708
[PubMed - indexed for MEDLINE]
5.

Structural characterization of an ATPase active F1-/V1 -ATPase (alpha3beta3EG) hybrid complex.

Chaban YL, Coskun U, Keegstra W, Oostergetel GT, Boekema EJ, Grüber G.

J Biol Chem. 2004 Nov 12;279(46):47866-70. Epub 2004 Sep 8.

PMID:
15355991
[PubMed - indexed for MEDLINE]
Free Article
6.

Structural fluctuation and concerted motions in F(1)-ATPase: A molecular dynamics study.

Ito Y, Ikeguchi M.

J Comput Chem. 2010 Aug;31(11):2175-85. doi: 10.1002/jcc.21508.

PMID:
20336770
[PubMed - indexed for MEDLINE]
7.

Molecular dynamics simulations of F1-ATPase.

Ito Y, Ikeguchi M.

Adv Exp Med Biol. 2014;805:411-40. doi: 10.1007/978-3-319-02970-2_17. Review.

PMID:
24446371
[PubMed - indexed for MEDLINE]
8.

Mechanism of the conformational change of the F1-ATPase β subunit revealed by free energy simulations.

Ito Y, Oroguchi T, Ikeguchi M.

J Am Chem Soc. 2011 Mar 16;133(10):3372-80. doi: 10.1021/ja1070152. Epub 2011 Feb 22.

PMID:
21341660
[PubMed - indexed for MEDLINE]
9.

Effects of side-chain packing on the formation of secondary structures in protein folding.

Yasuda S, Yoshidome T, Oshima H, Kodama R, Harano Y, Kinoshita M.

J Chem Phys. 2010 Feb 14;132(6):065105. doi: 10.1063/1.3319509.

PMID:
20151761
[PubMed - indexed for MEDLINE]
10.

A dynamic analysis of the rotation mechanism for conformational change in F(1)-ATPase.

Ma J, Flynn TC, Cui Q, Leslie AG, Walker JE, Karplus M.

Structure. 2002 Jul;10(7):921-31. Erratum in: Structure (Camb). 2002 Sep;10(9):1284.

PMID:
12121647
[PubMed - indexed for MEDLINE]
Free Article
11.

Structural comparison of F1-ATPase: interplay among enzyme structures, catalysis, and rotations.

Okazaki K, Takada S.

Structure. 2011 Apr 13;19(4):588-98. doi: 10.1016/j.str.2011.01.013.

PMID:
21481781
[PubMed - indexed for MEDLINE]
Free Article
12.

A normal mode analysis of structural plasticity in the biomolecular motor F(1)-ATPase.

Cui Q, Li G, Ma J, Karplus M.

J Mol Biol. 2004 Jul 2;340(2):345-72.

PMID:
15201057
[PubMed - indexed for MEDLINE]
13.

Effects of mutations in the beta subunit hinge domain on ATP synthase F1 sector rotation: interaction between Ser 174 and Ile 163.

Kashiwagi S, Iwamoto-Kihara A, Kojima M, Nonaka T, Futai M, Nakanishi-Matsui M.

Biochem Biophys Res Commun. 2008 Jan 11;365(2):227-31. Epub 2007 Nov 5.

PMID:
17983592
[PubMed - indexed for MEDLINE]
14.

Crystal structure of the epsilon subunit of the proton-translocating ATP synthase from Escherichia coli.

Uhlin U, Cox GB, Guss JM.

Structure. 1997 Sep 15;5(9):1219-30.

PMID:
9331422
[PubMed - indexed for MEDLINE]
15.

F1-ATPase rotates by an asymmetric, sequential mechanism using all three catalytic subunits.

Ariga T, Muneyuki E, Yoshida M.

Nat Struct Mol Biol. 2007 Sep;14(9):841-6. Epub 2007 Aug 26. Erratum in: Nat Struct Mol Biol. 2007 Oct;14(10):984.

PMID:
17721548
[PubMed - indexed for MEDLINE]
16.

The role of the amino-terminal beta-barrel domain of the alpha and beta subunits in the yeast F1-ATPase.

Yao B, Mueller DM.

J Bioenerg Biomembr. 1999 Apr;31(2):95-104.

PMID:
10449236
[PubMed - indexed for MEDLINE]
17.

Defective assembly of a hybrid vacuolar H(+)-ATPase containing the mouse testis-specific E1 isoform and yeast subunits.

Hayashi K, Sun-Wada GH, Wada Y, Nakanishi-Matsui M, Futai M.

Biochim Biophys Acta. 2008 Oct;1777(10):1370-7. doi: 10.1016/j.bbabio.2008.06.011. Epub 2008 Jul 9.

PMID:
18662668
[PubMed - indexed for MEDLINE]
Free Article
18.

Dynamic and coordinating domain motions in the active subunits of the F1-ATPase molecular motor.

Liu MS, Todd BD, Sadus RJ.

Biochim Biophys Acta. 2006 Oct;1764(10):1553-60. Epub 2006 Aug 22.

PMID:
17010684
[PubMed - indexed for MEDLINE]
Free Article
19.

Coupling H+ transport and ATP synthesis in F1F0-ATP synthases: glimpses of interacting parts in a dynamic molecular machine.

Fillingame RH.

J Exp Biol. 1997 Jan;200(Pt 2):217-24. Review.

PMID:
9050229
[PubMed - indexed for MEDLINE]
Free Article
20.

The conformation of the epsilon- and gamma-subunits within the Escherichia coli F(1) ATPase.

Hausrath AC, Capaldi RA, Matthews BW.

J Biol Chem. 2001 Dec 14;276(50):47227-32. Epub 2001 Oct 3.

PMID:
11585832
[PubMed - indexed for MEDLINE]
Free Article

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