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Items: 1 to 20 of 340

1.

Modular design of artificial tissue homeostasis: robust control through synthetic cellular heterogeneity.

Miller M, Hafner M, Sontag E, Davidsohn N, Subramanian S, Purnick PE, Lauffenburger D, Weiss R.

PLoS Comput Biol. 2012;8(7):e1002579. doi: 10.1371/journal.pcbi.1002579. Epub 2012 Jul 19.

2.

Robust design of biological circuits: evolutionary systems biology approach.

Chen BS, Hsu CY, Liou JJ.

J Biomed Biotechnol. 2011;2011:304236. doi: 10.1155/2011/304236. Epub 2011 Dec 7.

3.

Synthetic circuits, devices and modules.

Zhang H, Jiang T.

Protein Cell. 2010 Nov;1(11):974-8. doi: 10.1007/s13238-010-0133-8. Epub 2010 Dec 10. Review.

PMID:
21153514
4.

Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology.

Santra T, Kolch W, Kholodenko BN.

BMC Syst Biol. 2013 Jul 6;7:57. doi: 10.1186/1752-0509-7-57.

5.

Reverse engineering module networks by PSO-RNN hybrid modeling.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S15. doi: 10.1186/1471-2164-10-S1-S15.

6.

A non-homogeneous dynamic Bayesian network with sequentially coupled interaction parameters for applications in systems and synthetic biology.

Grzegorczyk M, Husmeier D.

Stat Appl Genet Mol Biol. 2012 Jul 12;11(4). pii: /j/sagmb.2012.11.issue-4/1544-6115.1761/1544-6115.1761.xml. doi: 10.1515/1544-6115.1761.

PMID:
22850067
7.

Predicting synthetic gene networks.

di Bernardo D, Marucci L, Menolascina F, Siciliano V.

Methods Mol Biol. 2012;813:57-81. doi: 10.1007/978-1-61779-412-4_4.

PMID:
22083736
8.

Computational design of synthetic regulatory networks from a genetic library to characterize the designability of dynamical behaviors.

Rodrigo G, Carrera J, Jaramillo A.

Nucleic Acids Res. 2011 Nov 1;39(20):e138. doi: 10.1093/nar/gkr616. Epub 2011 Aug 24.

9.

Synthetic biology: integrated gene circuits.

Nandagopal N, Elowitz MB.

Science. 2011 Sep 2;333(6047):1244-8. doi: 10.1126/science.1207084. Review.

10.

A systematic design method for robust synthetic biology to satisfy design specifications.

Chen BS, Wu CH.

BMC Syst Biol. 2009 Jun 30;3:66. doi: 10.1186/1752-0509-3-66.

11.

Towards the rational design of synthetic cells with prescribed population dynamics.

Dalchau N, Smith MJ, Martin S, Brown JR, Emmott S, Phillips A.

J R Soc Interface. 2012 Nov 7;9(76):2883-98. Epub 2012 Jun 8.

12.

Design and connection of robust genetic circuits.

Randall A, Guye P, Gupta S, Duportet X, Weiss R.

Methods Enzymol. 2011;497:159-86. doi: 10.1016/B978-0-12-385075-1.00007-X. Review.

PMID:
21601086
13.

Synthetic in vitro transcriptional oscillators.

Kim J, Winfree E.

Mol Syst Biol. 2011 Feb 1;7:465. doi: 10.1038/msb.2010.119.

14.

In silico implementation of synthetic gene networks.

Marchisio MA.

Methods Mol Biol. 2012;813:3-21. doi: 10.1007/978-1-61779-412-4_1. Review.

PMID:
22083733
15.

A synthetic biology approach to understanding cellular information processing.

Riccione KA, Smith RP, Lee AJ, You L.

ACS Synth Biol. 2012 Sep 21;1(9):389-402. Review.

16.

Engineering molecular circuits using synthetic biology in mammalian cells.

Wieland M, Fussenegger M.

Annu Rev Chem Biomol Eng. 2012;3:209-34. doi: 10.1146/annurev-chembioeng-061010-114145. Epub 2012 Mar 29. Review.

PMID:
22468602
18.

Computer-aided design of biological circuits using TinkerCell.

Chandran D, Bergmann FT, Sauro HM.

Bioeng Bugs. 2010 Jul-Aug;1(4):274-81. doi: 10.4161/bbug.1.4.12506.

19.
20.

Combined model of intrinsic and extrinsic variability for computational network design with application to synthetic biology.

Toni T, Tidor B.

PLoS Comput Biol. 2013;9(3):e1002960. doi: 10.1371/journal.pcbi.1002960. Epub 2013 Mar 28.

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