Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 137

1.

A text-mining system for extracting metabolic reactions from full-text articles.

Czarnecki J, Nobeli I, Smith AM, Shepherd AJ.

BMC Bioinformatics. 2012 Jul 23;13:172. doi: 10.1186/1471-2105-13-172.

PMID:
22823282
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The eFIP system for text mining of protein interaction networks of phosphorylated proteins.

Tudor CO, Arighi CN, Wang Q, Wu CH, Vijay-Shanker K.

Database (Oxford). 2012 Dec 5;2012:bas044. doi: 10.1093/database/bas044. Print 2012.

PMID:
23221174
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database.

Jamieson DG, Gerner M, Sarafraz F, Nenadic G, Robertson DL.

Database (Oxford). 2012 Apr 23;2012:bas023. doi: 10.1093/database/bas023. Print 2012.

PMID:
22529179
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S3. doi: 10.1186/1471-2105-12-S8-S3.

PMID:
22151929
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Text mining in livestock animal science: introducing the potential of text mining to animal sciences.

Sahadevan S, Hofmann-Apitius M, Schellander K, Tesfaye D, Fluck J, Friedrich CM.

J Anim Sci. 2012 Oct;90(10):3666-76. doi: 10.2527/jas.2011-4841. Epub 2012 Jun 4.

PMID:
22665627
[PubMed - indexed for MEDLINE]
Free Article
6.

KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways.

Spasic I, Simeonidis E, Messiha HL, Paton NW, Kell DB.

Bioinformatics. 2009 Jun 1;25(11):1404-11. doi: 10.1093/bioinformatics/btp175. Epub 2009 Mar 31.

PMID:
19336445
[PubMed - indexed for MEDLINE]
Free Article
7.

BioCreative III interactive task: an overview.

Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S4. doi: 10.1186/1471-2105-12-S8-S4.

PMID:
22151968
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.

Arighi CN, Carterette B, Cohen KB, Krallinger M, Wilbur WJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jimenez S, Roberts P, Matthews L, Becker K, Drabkin H, Bello S, Licata L, Chatr-aryamontri A, Schaeffer ML, Park J, Haendel M, Van Auken K, Li Y, Chan J, Muller HM, Cui H, Balhoff JP, Chi-Yang Wu J, Lu Z, Wei CH, Tudor CO, Raja K, Subramani S, Natarajan J, Cejuela JM, Dubey P, Wu C.

Database (Oxford). 2013 Jan 17;2013:bas056. doi: 10.1093/database/bas056. Print 2013.

PMID:
23327936
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation.

Van Auken K, Jaffery J, Chan J, Müller HM, Sternberg PW.

BMC Bioinformatics. 2009 Jul 21;10:228. doi: 10.1186/1471-2105-10-228.

PMID:
19622167
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Mining biological networks from full-text articles.

Czarnecki J, Shepherd AJ.

Methods Mol Biol. 2014;1159:135-45. doi: 10.1007/978-1-4939-0709-0_8.

PMID:
24788265
[PubMed - in process]
11.

Extracting semantically enriched events from biomedical literature.

Miwa M, Thompson P, McNaught J, Kell DB, Ananiadou S.

BMC Bioinformatics. 2012 May 23;13:108. doi: 10.1186/1471-2105-13-108.

PMID:
22621266
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Improving the prediction of pharmacogenes using text-derived drug-gene relationships.

Garten Y, Tatonetti NP, Altman RB.

Pac Symp Biocomput. 2010:305-14.

PMID:
19908383
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.

Lourenço A, Conover M, Wong A, Nematzadeh A, Pan F, Shatkay H, Rocha LM.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S12. doi: 10.1186/1471-2105-12-S8-S12. Erratum in: BMC Bioinformatics. 2012;13:180.

PMID:
22151823
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Overview of the BioCreative III Workshop.

Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1. doi: 10.1186/1471-2105-12-S8-S1.

PMID:
22151647
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation at the comparative toxicogenomics database.

Davis AP, Wiegers TC, Johnson RJ, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, Murphy CG, Mattingly CJ.

PLoS One. 2013 Apr 17;8(4):e58201. doi: 10.1371/journal.pone.0058201. Print 2013.

PMID:
23613709
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Analysis of biological processes and diseases using text mining approaches.

Krallinger M, Leitner F, Valencia A.

Methods Mol Biol. 2010;593:341-82. doi: 10.1007/978-1-60327-194-3_16. Review.

PMID:
19957157
[PubMed - indexed for MEDLINE]
17.

Automated extraction and semantic analysis of mutation impacts from the biomedical literature.

Naderi N, Witte R.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S10. doi: 10.1186/1471-2164-13-S4-S10.

PMID:
22759648
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

PathText: a text mining integrator for biological pathway visualizations.

Kemper B, Matsuzaki T, Matsuoka Y, Tsuruoka Y, Kitano H, Ananiadou S, Tsujii J.

Bioinformatics. 2010 Jun 15;26(12):i374-81. doi: 10.1093/bioinformatics/btq221.

PMID:
20529930
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. doi: 10.1186/gb-2008-9-s2-s1. Epub 2008 Sep 1.

PMID:
18834487
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Automatic extraction of microorganisms and their habitats from free text using text mining workflows.

Kolluru B, Nakjang S, Hirt RP, Wipat A, Ananiadou S.

J Integr Bioinform. 2011 Oct 10;8(2):184. doi: 10.2390/biecoll-jib-2011-184.

PMID:
21987583
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk