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Items: 1 to 20 of 114


Discriminative local subspaces in gene expression data for effective gene function prediction.

Puelma T, Gutiérrez RA, Soto A.

Bioinformatics. 2012 Sep 1;28(17):2256-64. doi: 10.1093/bioinformatics/bts455. Epub 2012 Jul 20.


GO-At: in silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data.

Bradford JR, Needham CJ, Tedder P, Care MA, Bulpitt AJ, Westhead DR.

Plant J. 2010 Feb;61(4):713-21. doi: 10.1111/j.1365-313X.2009.04097.x. Epub 2009 Nov 27.


Combining Pareto-optimal clusters using supervised learning for identifying co-expressed genes.

Maulik U, Mukhopadhyay A, Bandyopadhyay S.

BMC Bioinformatics. 2009 Jan 20;10:27. doi: 10.1186/1471-2105-10-27.


Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons.

Mateos A, Dopazo J, Jansen R, Tu Y, Gerstein M, Stolovitzky G.

Genome Res. 2002 Nov;12(11):1703-15.


Learning rule-based models of biological process from gene expression time profiles using gene ontology.

Hvidsten TR, Laegreid A, Komorowski J.

Bioinformatics. 2003 Jun 12;19(9):1116-23.


Semi-supervised analysis of gene expression profiles for lineage-specific development in the Caenorhabditis elegans embryo.

Qi Y, Missiuro PE, Kapoor A, Hunter CP, Jaakkola TS, Gifford DK, Ge H.

Bioinformatics. 2006 Jul 15;22(14):e417-23.


Supervised cluster analysis for microarray data based on multivariate Gaussian mixture.

Qu Y, Xu S.

Bioinformatics. 2004 Aug 12;20(12):1905-13. Epub 2004 Mar 25.


Prediction of regulatory interactions in Arabidopsis using gene-expression data and support vector machines.

Yu X, Liu T, Zheng X, Yang Z, Wang J.

Plant Physiol Biochem. 2011 Mar;49(3):280-3. doi: 10.1016/j.plaphy.2011.01.002. Epub 2011 Jan 12.


Gene expression trends and protein features effectively complement each other in gene function prediction.

Wabnik K, Hvidsten TR, Kedzierska A, Van Leene J, De Jaeger G, Beemster GT, Komorowski J, Kuiper MT.

Bioinformatics. 2009 Feb 1;25(3):322-30. doi: 10.1093/bioinformatics/btn625. Epub 2008 Dec 2.


Predicting gene ontology biological process from temporal gene expression patterns.

Lagreid A, Hvidsten TR, Midelfart H, Komorowski J, Sandvik AK.

Genome Res. 2003 May;13(5):965-79. Epub 2003 Apr 14.


Gene ontology based transfer learning for protein subcellular localization.

Mei S, Fei W, Zhou S.

BMC Bioinformatics. 2011 Feb 2;12:44. doi: 10.1186/1471-2105-12-44.


Prediction potential of candidate biomarker sets identified and validated on gene expression data from multiple datasets.

Gormley M, Dampier W, Ertel A, Karacali B, Tozeren A.

BMC Bioinformatics. 2007 Oct 26;8:415.


CARSVM: a class association rule-based classification framework and its application to gene expression data.

Kianmehr K, Alhajj R.

Artif Intell Med. 2008 Sep;44(1):7-25. doi: 10.1016/j.artmed.2008.05.002. Epub 2008 Jun 30.


Exploring matrix factorization techniques for significant genes identification of Alzheimer's disease microarray gene expression data.

Kong W, Mou X, Hu X.

BMC Bioinformatics. 2011;12 Suppl 5:S7. doi: 10.1186/1471-2105-12-S5-S7. Epub 2011 Jul 27.


Machine learning-based differential network analysis: a study of stress-responsive transcriptomes in Arabidopsis.

Ma C, Xin M, Feldmann KA, Wang X.

Plant Cell. 2014 Feb;26(2):520-37. doi: 10.1105/tpc.113.121913. Epub 2014 Feb 11.


Prediction of operon-like gene clusters in the Arabidopsis thaliana genome based on co-expression analysis of neighboring genes.

Wada M, Takahashi H, Altaf-Ul-Amin M, Nakamura K, Hirai MY, Ohta D, Kanaya S.

Gene. 2012 Jul 15;503(1):56-64. doi: 10.1016/j.gene.2012.04.043. Epub 2012 Apr 24.


Comparative evaluation of set-level techniques in predictive classification of gene expression samples.

Holec M, Kléma J, Zelezný F, Tolar J.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S15. doi: 10.1186/1471-2105-13-S10-S15.


Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

Brendel V, Xing L, Zhu W.

Bioinformatics. 2004 May 1;20(7):1157-69. Epub 2004 Feb 5.

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