Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 103

1.

Mixed sequence reader: a program for analyzing DNA sequences with heterozygous base calling.

Chang CT, Tsai CN, Tang CY, Chen CH, Lian JH, Hu CY, Tsai CL, Chao A, Lai CH, Wang TH, Lee YS.

ScientificWorldJournal. 2012;2012:365104. doi: 10.1100/2012/365104. Epub 2012 Jun 18.

2.
3.

BatchPrimer3: a high throughput web application for PCR and sequencing primer design.

You FM, Huo N, Gu YQ, Luo MC, Ma Y, Hane D, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2008 May 29;9:253. doi: 10.1186/1471-2105-9-253.

4.

Tools, resources and databases for SNPs and indels in sequences: a review.

Seal A, Gupta A, Mahalaxmi M, Aykkal R, Singh TR, Arunachalam V.

Int J Bioinform Res Appl. 2014;10(3):264-96. doi: 10.1504/IJBRA.2014.060762. Review.

PMID:
24794070
5.
6.

Decoding of superimposed traces produced by direct sequencing of heterozygous indels.

Dmitriev DA, Rakitov RA.

PLoS Comput Biol. 2008 Jul 25;4(7):e1000113. doi: 10.1371/journal.pcbi.1000113.

7.
8.
9.

ShiftDetector: detection of shift mutations.

Seroussi E, Ron M, Kedra D.

Bioinformatics. 2002 Aug;18(8):1137-8.

11.

STRait Razor: a length-based forensic STR allele-calling tool for use with second generation sequencing data.

Warshauer DH, Lin D, Hari K, Jain R, Davis C, Larue B, King JL, Budowle B.

Forensic Sci Int Genet. 2013 Jul;7(4):409-17. doi: 10.1016/j.fsigen.2013.04.005. Epub 2013 May 16.

PMID:
23768312
12.

Pyrobayes: an improved base caller for SNP discovery in pyrosequences.

Quinlan AR, Stewart DA, Strömberg MP, Marth GT.

Nat Methods. 2008 Feb;5(2):179-81. doi: 10.1038/nmeth.1172. Epub 2008 Jan 13.

PMID:
18193056
13.

Efficient, automatic detection of heterozygous bases during large-scale DNA sequence screening.

Phelps RS, Chadwick RB, Conrad MP, Kronick MN, Kamb A.

Biotechniques. 1995 Dec;19(6):984-9.

PMID:
8747666
14.

Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.

Mrázek J, Xie S.

Bioinformatics. 2006 Dec 15;22(24):3099-100. Epub 2006 Nov 8.

15.

Base-calling algorithm with vocabulary (BCV) method for analyzing population sequencing chromatograms.

Fantin YS, Neverov AD, Favorov AV, Alvarez-Figueroa MV, Braslavskaya SI, Gordukova MA, Karandashova IV, Kuleshov KV, Myznikova AI, Polishchuk MS, Reshetov DA, Voiciehovskaya YA, Mironov AA, Chulanov VP.

PLoS One. 2013;8(1):e54835. doi: 10.1371/journal.pone.0054835. Epub 2013 Jan 28.

16.

PolyScan: an automatic indel and SNP detection approach to the analysis of human resequencing data.

Chen K, McLellan MD, Ding L, Wendl MC, Kasai Y, Wilson RK, Mardis ER.

Genome Res. 2007 May;17(5):659-66. Epub 2007 Apr 6.

17.

Indel seeds for homology search.

Mak D, Gelfand Y, Benson G.

Bioinformatics. 2006 Jul 15;22(14):e341-9.

18.

SNP-PHAGE--High throughput SNP discovery pipeline.

Matukumalli LK, Grefenstette JJ, Hyten DL, Choi IY, Cregan PB, Van Tassell CP.

BMC Bioinformatics. 2006 Oct 23;7:468.

19.

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.

Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, Ruangrit U, Agavatpanitch G, Tongsima S.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S4. doi: 10.1186/1471-2164-10-S3-S4.

20.

GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB.

BMC Bioinformatics. 2005 Jan 17;6:9.

Items per page

Supplemental Content

Write to the Help Desk